KEGG   Zobellella sp. DQSA1: ACEVBK_15630
Entry
ACEVBK_15630      CDS       T11130                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
zob  Zobellella sp. DQSA1
Pathway
zob02024  Quorum sensing
zob03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:zob00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ACEVBK_15630 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    ACEVBK_15630 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zob03019]
    ACEVBK_15630 (hfq)
   03036 Chromosome and associated proteins [BR:zob03036]
    ACEVBK_15630 (hfq)
Messenger RNA biogenesis [BR:zob03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     ACEVBK_15630 (hfq)
Chromosome and associated proteins [BR:zob03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    ACEVBK_15630 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: XGY37264
LinkDB
Position
complement(3266169..3266435)
AA seq 88 aa
MAKGQSLQDPFLNALRRERIPVSIYLVNGIKLQGQVESFDQFVILLKNTVSQMVYKHAIS
TVVPARPVHHQAPSPGGAEQADTEQDQD
NT seq 267 nt   +upstreamnt  +downstreamnt
atggctaagggacaatctctgcaggatccgtttctgaatgcactgcgacgcgagcggatc
cccgtctctatttatctggtgaatggcatcaagctacagggccaggttgagtcgttcgat
caattcgttattctgctgaaaaacaccgtcagtcagatggtgtacaagcatgcgatttcg
accgtagtgccggcgaggccggtacaccatcaggcaccgtcgcccggtggtgccgagcaa
gccgataccgagcaggatcaggattga

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