KEGG   Zobellella sp. DQSA1: ACEVBK_17605
Entry
ACEVBK_17605      CDS       T11130                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
zob  Zobellella sp. DQSA1
Pathway
zob03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:zob00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ACEVBK_17605 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:zob03021]
    ACEVBK_17605 (rho)
   03019 Messenger RNA biogenesis [BR:zob03019]
    ACEVBK_17605 (rho)
Transcription machinery [BR:zob03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     ACEVBK_17605 (rho)
Messenger RNA biogenesis [BR:zob03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     ACEVBK_17605 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB AAA_22 AAA_25 S1CSD-TOTE-2 AAA Mor
Other DBs
NCBI-ProteinID: XGY37637
LinkDB
Position
complement(3699495..3700760)
AA seq 421 aa
MNLTELKNTPVSELIKLGETMGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKINEVN
YDKPENARNKILFENLTPLHANERMKMERGNGSTEDITARVLDLASPIGKGQRGLIVAPP
KAGKTMLLQNIAQSITYNHPECTLIVLLIDERPEEVTEMQRMVKGEVIASTFDEPAARHV
QVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVETGSKMDDVIYEEFKGTGNMELHLSRKIAEKRVYPAIDI
TRSGTRREELLTTPEELQKMWILRKIVHPMGEIDGIEFLIDKLAMTKTNDEFFEAMKRQQ
K
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaatcttactgaactcaagaatacccctgtatctgagctgataaagcttggggaaacc
atgggcctggaaaacctcgcccgtctgcgcaagcaagacatcatctttgctatcctcaaa
gcccatgccaaaagtggtgaagatatcttcggcgatggcgtgctggaaatcctgcaggac
ggcttcggcttcctgcgcagcgccgactcctcttacctggccggacccgatgatatctat
gtttcgcccagccagatccgccgtttcaacctgcgcaccggtgataccatctccggcaag
atccgaccgccgaaagaaggcgagcgctattttgccctgttgaagatcaacgaagtcaac
tatgacaagccggaaaacgcgcgtaacaagatcctgttcgaaaacctgacgccgctgcat
gccaacgagcgcatgaagatggaacggggcaacggttctaccgaagacattaccgcccgg
gtgctggatttggcgtcgcccatcggtaagggacaacggggcctgatcgtggcgcccccc
aaagccggtaagaccatgctgctgcagaacatcgcccaaagcatcacttacaaccatccc
gaatgtaccctgatcgtgctgttgatcgacgagcgtccggaagaagtgaccgagatgcag
cggatggtgaagggcgaagtcatcgcctcgaccttcgacgagccggcggcccgtcacgta
caggtggccgacatggtgatcgaaaaggccaagcgcctggtcgaacacaagaaggatgtg
gtgatcctgctcgactccatcacccgtctggcgcgggcctacaacacagtggtaccgtct
tccggcaaggtcttgaccggtggtgtggacgccaatgccctgcatcgacccaagcgcttc
ttcggcgccgcccgtaatgtagaggaaggcggcagcctgaccatcatcgccaccgccctg
gtggaaaccggctccaagatggatgacgtcatctacgaagagttcaagggcaccggcaac
atggaattgcacctgtcccgcaagatcgccgagaagcgggtctatccggccatcgacatc
actcgttccggcacccgccgggaagagctgctcaccaccccggaagagctgcagaagatg
tggattctgcgcaagatcgtgcaccccatgggcgagatcgacggtatcgaattcctcatc
gacaaactggcgatgaccaagaccaacgacgagtttttcgaagccatgaaacggcagcag
aaataa

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