Zingiber officinale (ginger): 121967106
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Entry
121967106 CDS
T08725
Name
(RefSeq) replication factor C subunit 4
KO
K10755
replication factor C subunit 2/4
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03030
DNA replication
zof03410
Base excision repair
zof03420
Nucleotide excision repair
zof03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121967106
03410 Base excision repair
121967106
03420 Nucleotide excision repair
121967106
03430 Mismatch repair
121967106
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
zof03032
]
121967106
03036 Chromosome and associated proteins [BR:
zof03036
]
121967106
03400 DNA repair and recombination proteins [BR:
zof03400
]
121967106
DNA replication proteins [BR:
zof03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
121967106
DNA Replication Termination Factors
ELG1-RFC complex
121967106
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
121967106
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
121967106
Check point factors
HRAD17(Rad24)-RFC complex
121967106
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
AAA_14
AAA_22
Rad17
Mg_chelatase
AAA_16
Viral_helicase1
RCF1-5-like_lid
AAA_5
nSTAND3
AAA_11
RuvB_N
AAA_19
AAA_28
AAA_assoc_2
AAA_24
AAA_30
DNAX_ATPase_lid
AAA_25
MeaB
AAA_3
AAA_18
ABC_tran
RNA_helicase
bpMoxR
KTI12
NTPase_1
IstB_IS21
SLFN-g3_helicase
NPHP3_N
DO-GTPase1
cobW
ATPase_2
Motif
Other DBs
NCBI-GeneID:
121967106
NCBI-ProteinID:
XP_042373071
LinkDB
All DBs
Position
3B:complement(93235778..93241387)
Genome browser
AA seq
337 aa
AA seq
DB search
MASSTSPPPSSSSSIPYDVPWVEKYRPAKVSDIVGNNDAISRLEVIARDGNMPNLILSGP
PGTGKTTSILALAHELLGPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLTPGRHKI
VILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCALVRFTRLSEQE
ILSRLMVVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQ
PHPLHVKNMVRNVLEGNFDDACSGLKQLYDLGYSPTDIITTLFRVVKNYDMAEYLKLEFL
KETGFAHMRICDGVGSYLQLSGLLAKFALARETAKAP
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atggcttcctccacttcccctcctccgtcctcctcctcctccatcccctacgacgtccct
tgggtcgagaagtaccgtcctgccaaggtctctgacattgtcggcaacaacgacgccatc
tcccgcctcgaggtcatcgctcgcgacggtaacatgcccaatctcatcctctcggggcct
cctggtaccgggaagaccacgagcatccttgctcttgcgcacgagttgctgggacctaat
taccgtgaggccgtcctcgagctgaacgcgtccgatgacaggggcatcgatgttgtcagg
aacaagatcaagatgtttgctcagaagaaagtgacactgacccctggtcgccacaagatt
gtaattttggatgaggctgatagtatgacttctggggctcaacaagcactgagaagaacg
atggagatttattcaaataccaccaggtttgctcttgcctgcaacacttcgtctaagata
attgagccaattcagagcagatgcgcgcttgttcgctttacaagattgtcagagcaagag
attcttagccgtcttatggtggttgtggaggcagaaaaagtcccttatgtacccgaaggc
ctcgaagccattatatttactgctgatggtgatatgcggcaagctttgaacaatttacaa
gctactttcagtggatttcgttttgttaatcaagataatgtgttcaaggtttgtgatcag
ccccatccattgcacgtaaagaatatggttcgcaatgtgcttgaagggaattttgatgat
gcatgttctggcttgaaacaactctatgatctgggttactcccccactgacatcataacc
accctcttccgtgtggtcaagaattatgatatggctgaatatttaaagctggaatttctc
aaggagacaggatttgctcatatgagaatctgtgatggagtaggttcctaccttcagctc
tcaggtcttctggcaaagtttgcgctggctagggaaactgcaaaagctccataa
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integrated database retrieval system
