Zingiber officinale (ginger): 121967256
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Entry
121967256 CDS
T08725
Name
(RefSeq) F-box protein SKP2A-like isoform X1
KO
K03875
F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121967256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
121967256
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
121967256
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Motif
Pfam:
LRR_6
LRR_4
F-box
F-box-like
Motif
Other DBs
NCBI-GeneID:
121967256
NCBI-ProteinID:
XP_042373296
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Position
1B:complement(56667926..56670407)
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AA seq
399 aa
AA seq
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MEIATPLPVTALGRSSQPSLTSSIKALPDQILHQPVLETSRLVAVSAFGKKMETDAAVTM
DWKDLPAELLRRILSLVDSNGAMQIEVVASCVCTGWRDAIGLTNLSLSWCNKDMNILVQS
LVPKFPQLQVLTLRQNYVPQLEDNAVEIVAKYCHELQELDLSKSLRLTDRSLYALGNGCP
YLTKLNISGCSAFGHSALAYLASCCVKLKKMNLCGCVRAATDTALQSISHHCSQLQSLNL
GWCESVTDKGVTSLASGCPDLRDLDLCGCVLITDESVIALANCCLHLRSLDLYYCQNITD
KAMYSLANNSSKSRLGYWQRSSSSSNEEGLMNLNISQCTALTASAVQAVCDSFPSLHTCL
ERNSLIISGCLGLTSVHCACAVRANHAEATVLADHHAPY
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggagatcgcaacgcccctcccagtcacagccctcggccgatccagccaaccctctctg
acgagctctatcaaagctttaccagatcagatcctccatcagccggtgctggagacctcg
aggctagttgcggtgtctgcttttggaaagaagatggagacagatgctgcagttacgatg
gattggaaggaccttcctgcggagctgctgcggagaatcctttcgcttgtagacagcaat
ggcgccatgcagattgaggtggtagcctcatgtgtttgtactggttggagagatgccatc
ggacttacgaatctctcattatcatggtgcaacaaagacatgaacattcttgtgcagtca
cttgtgcccaagttcccacagcttcaagttttgactcttagacaaaattatgttccacaa
cttgaggacaatgctgttgagatagttgctaaatactgtcatgaattgcaggaactagac
cttagcaaaagcctaaggctgactgacagatctttgtatgcactaggcaacggctgtcct
tacctaacaaaactaaatattagtggatgttctgctttcggccactctgcccttgcatat
cttgctagttgctgtgtaaaactgaaaaagatgaatctctgtggatgtgttagagctgca
actgacacagctttgcagtccatatcgcatcattgcagccaattacagtctttgaatttg
ggttggtgtgaaagtgtcactgataaaggagtaaccagtttagcatctggatgccctgat
ctaagggatttggacttgtgtggctgtgtgctcattacagacgagagcgtgattgcacta
gcgaattgttgcctgcacctgagatctctggacttgtattactgccagaacatcaccgac
aaagctatgtattctctggcaaataacagcagcaagagccgacttgggtattggcaaaga
agcagcagcagcagcaatgaagaagggttgatgaacctcaacatcagtcagtgcacagcc
ttaacagcttctgcagttcaagctgtttgtgactcatttccatcactgcatacctgcctt
gagaggaattcgctcatcatcagtggctgtctcggcctcacttctgtgcattgtgcctgt
gctgttcgtgctaaccatgccgaggcaactgtgttagctgatcaccatgctccttactga
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