Zingiber officinale (ginger): 121967443
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Entry
121967443 CDS
T08725
Name
(RefSeq) pre-mRNA-processing protein 40A-like
KO
K12821
pre-mRNA-processing factor 40
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121967443
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
121967443
Spliceosome [BR:
zof03041
]
Complex A
U1 snRNP components
U1 related factors
121967443
Complex B
121967443
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
mRNA_decap_C
Motif
Other DBs
NCBI-GeneID:
121967443
NCBI-ProteinID:
XP_042373612
LinkDB
All DBs
Position
3B:complement(119441635..119459190)
Genome browser
AA seq
1019 aa
AA seq
DB search
MASNPQASGTLPPRPAVLGSAGPPQNFALPMPMQFTPLVPPQTNQFVPSQQFRPVGQGMP
GPNVAIPNGQTQMPHFPQSTLYMPPMSGQPGQMPPSSQAIPLPYFQANRPIASGPLPSQP
NAQVPGNLPSFPSMGMHHSSSYTFVTSYGQAPNNVISSSQYQPASQMQIPAPSVAQAWPG
PVSITPVTPIVQTVHQPSATVVAPQAQSLQPSSNDHNSSDWHEHTSPDGRRYYYNKKTKQ
SVWEKPHELMTPVERADASTDWKEFTAADGRKYYYNKVTKQSKWTMPDELKLARDQSEKT
ATQLLPVEIGTPAPSVASTIPSTETSSMSTSLPTVTEVVSTSSINPSLMESSSGAETSMG
INSSSSVGKENEADLPNLHYPANSAPDLVHSSATAEHTSVVVDSTATEIKSNQDNNSSLT
NTLGVHGETFQEQEEPKEPTPLVGKDNVRSSDDKAFDEQAYANKLEAKNAFKALLESANV
QSDWTWEQAMRVIINDKRYGSLRTLGERKQAFNEYLGQRKKQETEERRIKQKKSREDFVK
MLEECKDLTSSTRWSKAIIKFEDDERFCAVERPREREDLFESYITELQKKERTKAADDHK
RNIMEYREFLDSCDFIKANSQWRKVQDRLEGDERCYRLEKIDRLEIFQEYVRDLEKEEEE
KRKIQKEQIRRAERKNRDEFRKLMEDHVASGVLTAKTQWRDYFSHVKDLAPYLAVASNSS
GSTAKDLFEDVVEELEKQYLEDRSQIKDAVKIGKITLASSWTFEQFKTAVAGIGSLKGIP
EINLKLAFDELLERLQEKEEKEAKKRQRLADSFSDLLYSIKELTAHSNWEESKLLFLDSQ
EYWSIDDDNFARELFEAYIAQLKEKLKEKDRKREEEKLKKEKEREERRKEKEKEKERERA
KQKGKDRTRKDEAESDDADLVDDYGSKDRKRDKEKERKHRKHHHSHADEISSGKDEEDEH
RKSKRHSSDRKKSHKHSHATDSDTENRHKRHRKDRDGSRRNGSHEELEDGEVGEDGEIC
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atggccagcaacccacaagcctctgggactctgcctcctaggcctgcagttctggggtct
gctggcccacctcaaaactttgctctgcctatgcctatgcagtttacaccactagttcct
ccacagacaaatcaatttgtgccttctcagcaattccggcctgttggacaaggaatgcct
ggaccaaatgttgccatacctaatggccaaactcaaatgccccattttcctcaatcaaca
ctgtatatgcctccaatgtcaggccagccaggtcaaatgccaccatcatcacaagcgatt
ccattgccatattttcaagcgaaccgacctatcgcatctggacctctaccatcacaacca
aatgctcaagtgcctggcaatttacctagttttcctagtatgggaatgcatcactcttca
tcgtacacgtttgtgacatcttatggccaagccccaaacaatgtcatttcatcatcacag
taccaacctgcatcacagatgcaaattcccgccccttcagtagcacaagcctggcctgga
cctgtcagcattactcctgttacgcctattgttcagaccgtacatcaaccttcagctact
gtcgtagcacctcaagcacaaagtttgcaacctagctctaacgaccataattcttcggat
tggcatgaacacacatctccagatggtagaaggtattattacaataagaagaccaaacaa
tctgtctgggagaagccgcatgaattaatgactcctgttgagagggctgatgcatcaact
gactggaaggaattcactgctgcagatggtcgaaaatactactataacaaagtcacaaag
caatcaaaatggacaatgcctgatgaactcaagctagctcgggatcaatcagaaaaaaca
gcaactcagctactaccagtagaaatagggacacctgctccatctgttgcttcgactatt
ccttctaccgaaacctcttccatgagcacttctctgcccactgtaacagaggtggtatct
acttcaagcataaacccctctttgatggaatcatctagtggtgcagaaacatctatggga
atcaattctagctcttctgtaggaaaagaaaacgaagctgatctaccaaatcttcactat
cctgcaaattcagctcctgatctagttcattcgtctgcaactgctgaacatacttctgtt
gtcgtggattctacagccactgagatcaagagcaatcaagacaacaactcatccctcaca
aataccttgggtgttcatggtgaaacatttcaggaacaggaggaacccaaagaacccaca
cctcttgttggtaaagacaatgttaggtcatctgacgataaagcatttgatgaacaagct
tatgctaataagttggaggcaaaaaatgcttttaaagctttacttgaatctgccaatgtt
cagtctgattggacttgggagcaggcaatgagggtcatcataaatgataaaagatatggt
tctttgagaacacttggagaaaggaaacaagcatttaatgagtaccttggtcaaagaaaa
aaacaggagacagaggaaaggcgcattaagcaaaagaaatcacgggaggattttgttaag
atgttagaggaatgcaaagaccttacatcatcgactagatggagtaaagcaataattaag
tttgaggatgatgaacgattttgtgctgttgaacggccaagagaacgtgaagatcttttt
gaaagctacattaccgagctacaaaaaaaggaaagaacaaaagctgctgatgatcataaa
agaaacattatggaatacagagagtttcttgattcttgtgacttcattaaggcaaatagt
caatggagaaaagttcaagatcgtctcgagggtgatgaaagatgctatcgacttgagaag
attgatcgattagaaatttttcaggagtatgtacgtgatctggagaaagaagaggaggaa
aagaggaaaatacaaaaggaacaaattcgacgagcagagcgcaaaaaccgtgatgaattt
cgcaagcttatggaagaccatgttgcttctggtgttcttacagctaaaactcaatggcgt
gactatttttcgcatgtcaaagatttggcaccttacttggctgtagcatcaaattcatca
ggctcaacagctaaagatttgtttgaagatgttgtagaggaacttgaaaaacagtacctt
gaggacaggtcccaaatcaaagatgcagtgaagattggaaaaattactttggcttcatca
tggacatttgagcaattcaagactgctgtggcaggtattggtagtttgaaaggaatacct
gagataaacttgaagctagcattcgatgaactattggaaaggcttcaggaaaaagaggag
aaagaggctaaaaagcgccaacgtcttgcagacagtttttctgatctgttatactcaatc
aaggaattaactgcccactcaaattgggaggaaagcaaattactatttttagacagccag
gagtattggtcgatagatgatgacaattttgcaagagagctttttgaggcctacattgct
cagttgaaggaaaaattgaaagaaaaagaccgcaagagagaagaagaaaagctgaaaaaa
gagaaggaaagagaagagcgacggaaggagaaagagaaggaaaaagagagggagcgtgct
aaacagaaggggaaggatcggactagaaaagatgaagctgagagcgatgatgctgatttg
gtggatgactatggctcaaaggatcgaaaaagggacaaggagaaagaaaggaaacaccgg
aaacaccatcacagtcatgctgatgaaataagctcgggtaaggatgaggaagacgagcac
aggaagtccaagaggcacagcagtgatcgaaagaaatctcacaagcattcccatgctaca
gattctgacactgaaaatcgacacaagaggcatagaaaagatagagatggatcacggaga
aatggtagtcacgaagaactagaagacggagaagttggagaagatggagagatttgttag
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