Zingiber officinale (ginger): 121967460
Help
Entry
121967460 CDS
T08725
Name
(RefSeq) small nuclear ribonucleoprotein SmD3b-like
KO
K11088
small nuclear ribonucleoprotein D3
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121967460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121967460
03041 Spliceosome [BR:
zof03041
]
121967460
03032 DNA replication proteins [BR:
zof03032
]
121967460
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
121967460
Spliceosome [BR:
zof03041
]
Complex A
U1 snRNP components
Sm proteins
121967460
U2 snRNP components
121967460
Complex B
U1 snRNP components
121967460
U4/U6.U5 tri-snRNP components
121967460
Complex C
U2 snRNP components
121967460
DNA replication proteins [BR:
zof03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
121967460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
121967460
NCBI-ProteinID:
XP_042373647
LinkDB
All DBs
Position
3B:119783387..119794730
Genome browser
AA seq
132 aa
AA seq
DB search
MSRSLGIPVKLLHEAAGHIVTVELKSGELYRGNMIECEDNWNCQLESITYTAKDGKVSQL
EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIRGKGSSLGVGRGRAVAMRARAQAAGRGG
PPGRGAVPPIRR
NT seq
399 nt
NT seq
+upstream
nt +downstream
nt
atgagccggagtctggggatccccgtgaagctgcttcacgaggcagcggggcacatcgtc
acggtggagctcaagagcggcgagctctaccggggcaacatgatcgagtgtgaggacaac
tggaactgccaactcgaaagcatcacatatactgccaaggatgggaaagtatcacagctc
gagcatgttttcatacgagggagcaaagtaaggtttatggtcatccctgatatgcttaag
aatgcaccaatgtttaagcgcttggatgctagaatcagaggcaaaggatcttctcttgga
gttggtcgtggtcgtgctgttgccatgcgtgcaagggcccaagcagctgggcgcggtggc
cctcctggtcgaggagctgttcctccaattagaagatag
DBGET
integrated database retrieval system
