Zingiber officinale (ginger): 121967652
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Entry
121967652 CDS
T08725
Name
(RefSeq) WD repeat-containing protein 3-like
KO
K14556
U3 small nucleolar RNA-associated protein 12
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121967652
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zof03009
]
121967652
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
121967652
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Utp12
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
ANAPC4_WD40
WDR90_beta-prop_4th
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
PEP5_VPS11_N
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_IP5PC_F
Beta-prop_EIPR1
WD40_like
WDR54
Beta-prop_LRRK2
KNTC1_N
CDtoxinA
Beta-prop_WDR19_1st
PROPPIN
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Nucleoporin_N
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
121967652
NCBI-ProteinID:
XP_042373940
LinkDB
All DBs
Position
3B:complement(127074935..127081226)
Genome browser
AA seq
939 aa
AA seq
DB search
MVKSYLRYEPGLVFGVISSVDANIAYDPSGLHLLAPALDKFFLWNLKQGLAFKTFSSSTR
SSHTLAVTTIAASPSSSSTSIASGHTDGSIRLWDCEKATCEATLNGHKTAVTALRYNHLT
SLLASGGKDCDVILWDVVGEAGLFRLRGHRDQVTDLVFIDSGKKLVTSSKDKFMRVWDLE
LQQCVQIVGGHHSEIWSLDVDPMERFLVSGSADSELKFYEIKRNTEVVEKESKWEVLKNF
GEIQRQSKDRVAALRFNKSGNLLACQVAGKLVEIYRVLSDDEAKRKAKRRLHRKKEKLLT
RDAAGGNENEGLADSLSSQEFQHPTVVVSDVFKLLQMLRSSKKISSIAFSPSDPKVGLAT
LSLSLNNNMLETHLVDSDKISKLYSIELQGHRSDIRSVTLSSDNDLLMSTSHNSVKIWNP
TTGVCLRTIESGYGLCSSFVPGNRYALVGSKSGSLEIIDVGSGSCIEVVEAHADSIRSLV
QLPDENGTVGGQGFVTGSDDRDVKFWEYTVKQKSDNEPKHLGVTNVRTLKMDEDVLAISV
SPDSKYLAVSLLEKCAIKVFFMDSLKLFLSLYGHKLPVLCMDISSDGDILVSGSADKNLK
IWGLDFGDCHKSIFAHADSVMDVKFVRNTHYMFSVGKDRLVKYWDADKFELLLTLEGHHA
EVWCLAVSSRGDFIVTGSHDRSIRRWDRTEEPFFIEEEREKRLEEVFESALDNLNEDRYA
PKELVPDEGSVGVPGKETKETLSATDLIIDALDMADTENKRMDQHKEEQMDSKAVFQPNI
MMRGLSPSDFVLQTLGNVNTNDLEPTLLSLPFSDALKLMSYLKEWVRIPDKVELVCRVTT
VLLQTHHNQLTTAVASRPILTVLKDILHEKVKERKDTIGFNLAAMNHLKELMSMRSDALF
QDAKAKLMEIRQWQSKRTDSGEANNSRRKKKKLKPSNGV
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagtcgtacctccggtacgagccaggtctcgtcttcggcgtcatctcctctgtc
gacgctaatattgcctacgatccctcagggttgcacctccttgcaccggcccttgacaag
tttttcctctggaacctcaagcaaggtctcgcctttaagaccttctcatcctccacgcgc
tcctcccataccctcgcagtcaccacaatcgccgcctctccttcctcgtcgtccacatct
attgccagcgggcacactgatgggagcattcgactgtgggactgcgagaaggctacatgt
gaggcgactctaaatggccacaaaactgctgtcactgccctccgctataaccacctcacc
tccctccttgcttctggtggcaaggactgtgatgtcatcctatgggatgtagttggtgaa
gcagggctatttcggctccgtggccatcgagaccaggtcaccgaccttgtatttattgat
tcaggaaagaagcttgtcactagttccaaggacaagttcatgagggtttgggatcttgag
ttgcagcaatgtgtacagatagttggcggacaccacagtgaaatctggtcgctagatgtt
gatcctatggaaaggtttttggtctctggatcagcagattctgaactcaaattttatgaa
ataaaaaggaacactgaggtggttgagaaggaaagtaagtgggaggttttgaagaacttt
ggtgaaatccaaaggcagagcaaggatagagtggctgctttgagatttaacaagtctgga
aaccttttagcatgtcaggtggctggaaaacttgtggaaatttatcgagttctcagtgat
gatgaagcaaagcggaaagccaagaggcgtcttcaccgaaagaaagaaaagcttttgaca
agagatgcagctggaggaaatgaaaatgaagggcttgcagattccttatccagccaggaa
tttcagcaccccactgttgtggtgtcagatgtgtttaagcttcttcagatgctacgctca
agcaagaaaatttcttctattgctttcagtcctagtgatcccaaagttggtcttgctact
ttatcattatccttgaataataacatgctagagacccatttagttgattctgataagata
tccaaattgtattcaatagagcttcaggggcatcgctcagatatcagaagtgttacactt
agctcagataatgatcttttgatgtcaactagtcataattctgtaaagatttggaacccc
actactggagtttgcctccgcaccattgagtctggatatggactgtgtagttcttttgta
cctggaaaccgctatgccctagttggatccaaaagtggatccttggagataattgatgtt
ggtagtgggagttgcattgaagtagtagaagctcatgctgattccataagatcgcttgta
caacttccagatgaaaatggaactgttggcggacagggctttgttacaggaagtgacgac
cgtgatgtaaaattttgggaatataccgtcaagcaaaaatcagataatgaacctaaacat
ctaggtgtgacaaatgtgagaactttgaaaatggatgaagatgttttagcaatctctgtt
agtccagactctaaatacctagctgtttctctgttggaaaagtgtgcaatcaaggtcttc
ttcatggattctttaaaacttttcctttcactttatggccataagcttccagttctctgt
atggatatttcatctgatggtgatattctagttagtggctcagcggacaaaaatttgaag
atttggggtctagactttggcgattgccacaaatctatttttgcgcatgctgacagtgtt
atggacgttaagtttgttagaaatactcattatatgtttagtgtgggcaaagatcgactt
gtgaaatattgggatgctgacaaatttgagttgctcctaactctcgaggggcatcatgct
gaagtttggtgccttgctgttagcagtcgtggtgatttcattgtcacaggatcacatgat
cgttcaatacgtcgttgggataggactgaagaacctttcttcatagaggaagaaagagaa
aagagattggaagaggtatttgaatctgccttagacaatttaaatgaagacagatatgca
ccaaaagaattggttccagatgagggatctgtaggtgtgcctggcaaggaaaccaaggaa
accctgagtgcgactgacttgatcattgatgcattagacatggcagatactgaaaataaa
cggatggatcaacacaaggaagagcagatggacagtaaagcagtgtttcaaccaaacata
atgatgcgtggtctttcaccatctgattttgttctccaaacgcttggaaatgttaacacc
aatgatctagaaccaacacttttgtcattgccattctctgatgctttgaagcttatgtct
tatttgaaagaatgggtacgcatcccagacaaggttgagcttgtttgcagggtcacgaca
gttctattgcaaacacatcataatcagctaactacagctgtggcttctagaccaattttg
accgtactgaaggacattcttcatgagaaagttaaggagcgcaaagacacaatcggtttc
aatctagccgccatgaatcatcttaaggaattgatgtccatgagatccgatgcactcttc
caagatgccaaggcgaaactcatggaaatccgtcaatggcaatccaagcgtacggacagc
ggggaagcaaataacagcaggaggaagaagaagaaactaaagccttccaatggggtctaa
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