Zingiber officinale (ginger): 121967906
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Entry
121967906 CDS
T08725
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121967906
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121967906
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121967906
mRNA degradation factors
5'-3' decay
Decapping complex
121967906
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_EML_2
Beta-prop_Vps41
Beta-prop_TEP1_C
Beta-prop_HPS5
RED_N
Motif
Other DBs
NCBI-GeneID:
121967906
NCBI-ProteinID:
XP_042374357
LinkDB
All DBs
Position
3B:133801341..133812257
Genome browser
AA seq
1383 aa
AA seq
DB search
MASPGGGPNTSAIYDTQALFKPPSPSPGAIPRQPFPPTSAYPSPLPPSTFPTPTHPGAFS
YPMATPPFHHHPFLHYPQESLHRLPVIYPPVHPHLPNPNPNTNPSTSSNTNPGARLMALL
NPPASPQLDPAVSMPPPSSTPSDFLMPSTVGVLHPMPSAPHAALAQPAPTRLPSNKSPRG
RLLSTGAHAVYDVDSRLPGENQPPQLEVTPITKYISDPGLVLGRQIAVNRTYICYGLKLG
AVRVLNINTALRSLLKGHSQRVTDMAFFAEDVHLLASASIDGRIFVWKIDEGPDEDNKPL
ITGKIIMAIQIVGDKESYHPRICWHSHKQEIMFVGIGVYVLKIDINKVGRGKEFLAEEPL
KCPIEKIIEGVQIIGKHDGEVTDLSISQWMVTRLASSSKDGTVKIWDDRKAMPLSVLRPH
DGHPVNSVEFMTAPNHPEHINLITAGPLSRELKFWASSSEEGWLLPSDSESWHCSQTLDL
RSSSEPQTEEAFFNQLVVLPQASLIIIANAKKNAIYAVHIDYGLCPASTRMDHIADFTVA
MPILSLTVTHDILLEGDIIVQVYCVQTQAIQQYALDLIQCLPPPIANVGLAKDPSSHVTE
TSSSEGLPVPAISSEHYRTDYAMENASLQTLLTDGGMDCASAAPALVIPDSSETTGINES
STSNADVKLIAPPLPDVDADAMHAASSPVPFNMDIAGRSLALKSPEKTSEDAPSYRGHET
DQSVFGYSVEKDGRNTGHNDISPIFNPPMMLKLGGNSTHLITPSEILSGAISTSESSNVN
KKLAEEMKDQDINTSDSIKHAEVEVKLVGEFKAVQPETNTQKVAQDFSVRDLSPQTSIAH
SEVDNEAPIIVTSFEEESHSGDDIAMVESKRTLLATAEEDGRDSTINATEDITEPSVITV
SQSLSVVKGKKQKGKQHQTSSPSSPSSTLLHSTYSLNESALSENAPLVDPASTDILAMQE
MLSQVVNMQKELQKQMSVIVAAPVAKEGKRMETSLSRNIEKMIKANGDALWARVQEENAK
YEKFDKERMQQITNLIANNVNKDLPTILERAVKKELSTIGSTVARSVAPAISSAIAESFQ
RGVGDKAVTQLEKSVSSKLEATVARQIQVQFQNSGKQILQDSLRSCLESSVVPAFEQSCK
AMFEQVDNAFQKGMNEHAAAAHQQLEAANTPLAVTLREAISSASSITQSLTTELIDGQRK
ILALIAAGNTKVLNPLVSQQANGPTASPPEMQASLSLLQVGAHLDPTKELSRLISEHKYE
EAFTLALQRSDVSIVSWLCAQVDLHAICSTVPLPLSQGVLLALLQQLACDIGNETSRKVG
WMTDVAVVINPADQMIVLHVRPIFEQVYSLLGRQRALPTTTAPESAIIRLLMHVINSVLT
SCK
NT seq
4152 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcccccggcgggggccccaacacctctgcaatctacgacacgcaggccctgttc
aagccccccagccctagtcccggtgccattccccggcagccattccctcctacctctgcg
tacccgtctccgctaccgccgtcgacatttccgactccgacgcatccaggcgctttctca
taccccatggctactccgcctttccaccaccatcctttcctccactacccccaggagtcc
ctccaccgcctcccagtcatctacccgcctgtgcatccccaccttccgaaccccaatccc
aacactaaccccagtactagctccaatacaaatcccggtgctcgccttatggccctcctg
aaccctcctgcaagcccccaacttgatcccgccgtctcgatgccgcctccctcttctact
ccttcggatttcctgatgccttccacggttggcgtgcttcatcctatgccgtcagcacca
catgcggcactggcccagccagcgccaacgaggttgccgagcaacaaatcgcctaggggt
cggcttctcagcacaggggcacatgctgtctatgatgtggattcacgtctgccgggagag
aaccaaccgcctcagctcgaggtgacgccgatcaccaagtatatatctgacccagggctt
gttttgggccggcaaatcgccgtcaaccggacctacatatgctatgggcttaagcttggt
gctgttcgggtgctaaatatcaacacagctctgagatctttgctaaaggggcattctcag
agagttacagacatggctttctttgccgaagatgtacaccttttagccagtgcaagcatt
gatggaaggatttttgtgtggaagattgatgaggggcctgatgaggacaacaagccactg
attactggaaaaattataatggctattcagatagttggagataaagagtcatatcatccc
cgaatttgttggcactctcacaagcaagaaattatgtttgttggaataggggtatatgtg
ctaaaaattgatataaataaagtcggaaggggaaaagaatttttggctgaggagccacta
aaatgccccattgaaaagatcatcgaaggagtgcagattataggtaaacatgatggagag
gtgactgatttgtccatatcgcaatggatggttactcgtttagcatcatcatcaaaagat
ggcacggttaagatctgggatgaccgtaaagcaatgcccctctctgttttaaggccacat
gatggtcatcctgtcaactccgtggagttcatgacagcacctaaccaccctgaacacatc
aatctcatcacagctggacctttaagtcgagaattaaaattttgggcttcttctagcgaa
gaaggttggctattgcctagtgactctgaatcatggcattgctctcagactttggacctg
agaagttcttcagaacctcagacggaagaggcttttttcaatcaattggtagttttacct
caagcaagccttataataattgcaaatgccaagaagaatgctatttatgcagtgcatatt
gactatggtttatgtcctgcttctacacgcatggaccatatagcagatttcactgtggca
atgcctattttgagtcttacggtaacacatgatatcctgcttgagggagatataattgta
caagtatattgtgtacaaacacaggcaattcaacaatatgctttggatttaattcagtgt
ttaccaccaccaattgctaatgttgggttagcaaaagatccttcatctcatgtaactgag
acatccagttccgagggattacctgtgccagcgatatctagtgaacactacagaactgat
tatgctatggaaaatgcttcactacaaacccttcttactgatggtggcatggattgtgca
tctgcagctccagctcttgtaatcccagattcttctgagactaccggtatcaatgaatca
tctacatcaaatgctgacgttaaactcattgctcctccacttccagatgtggatgcagat
gcaatgcatgctgcctcctctcctgttccctttaacatggacattgcaggaagatcactt
gctctgaagagccctgaaaagacatctgaggatgcaccatcatataggggtcatgaaact
gatcagtcagtgtttgggtattcagtcgaaaaggatggacgcaatactggacataatgat
atatcccctatatttaatcctcctatgatgcttaagcttggtggaaactcaactcaccta
attactccctctgaaattttatctggtgctatatctacttcagaaagcagtaatgtcaat
aaaaaacttgctgaggaaatgaaggaccaagacataaacactagtgacagcattaaacat
gctgaagtagaagtgaaattagtgggtgagtttaaggcagttcaaccggaaaccaatact
cagaaggtggctcaagatttttctgttcgggatttgtctccccaaacttctatagcccac
tcggaggtagataatgaggctcctataatagtaacttcctttgaagaagaaagtcactca
ggtgatgacattgctatggttgagtcaaagagaaccttattagctaccgctgaggaagat
ggacgagatagcacaataaatgcaacagaagatataactgaaccttctgttattactgta
tctcaatctctctcggttgtcaaaggaaagaaacaaaaaggaaaacaacatcaaacatcc
agtccttcatcaccttcctctacccttctgcactccacctattctttgaatgaatcagca
ctcagtgagaatgcccctttagttgatcctgcttccacagatattcttgcaatgcaggaa
atgctgagccaggtagtgaatatgcagaaggaactgcaaaagcagatgagtgtaattgtg
gctgctcctgtagcgaaggaaggaaaacgaatggagacttccttgagccgaaatatagag
aagatgatcaaagctaatggagatgctttatgggcccgtgttcaagaagaaaatgcaaaa
tatgagaagtttgacaaggaacgtatgcaacaaatcaccaatctaattgctaacaatgtg
aataaggacttgccaaccattttagagagggcagtgaagaaagaactttctacaatagga
tccactgtggctcgttcagttgcacctgctatttcttcagctatagcagagtcatttcag
aggggagttggcgataaagcagtaactcagttggagaagtcagtcagttctaaacttgaa
gctactgttgcaagacaaatccaagtgcagtttcaaaactctgggaagcagattcttcag
gattctcttagatcctgtttggaatcatctgttgttcctgcatttgagcaatcttgtaaa
gcaatgtttgagcaagttgacaatgcattccagaaaggaatgaatgaacacgctgctgct
gctcatcaacaacttgaggcagcaaatacacctttagcagttactttaagggaagcaatc
agctctgcatcttcaatcacccaaagtctcactactgagttaattgatggccaacgaaaa
attttggctcttatagcagcaggaaacacaaaggttctcaaccctctggtttcccaacaa
gctaacggccctacagctagccctcctgagatgcaggcctccctgtctctcctgcaggtt
ggggcacatctagatccgacaaaagaactctccagattaatttctgagcataaatatgag
gaagcattcacactggcgcttcaaagaagcgatgtgtcgatagtgtcttggctatgtgca
caggtggatttgcatgcgatttgttccacagtgccacttcccctaagtcaaggtgttctt
ctggcacttctgcagcaactggcctgtgatatcggcaatgagacatccagaaaagttggc
tggatgactgatgttgctgtagtaatcaacccggctgaccaaatgattgtgttacacgtc
cgacctatctttgagcaagtgtacagtttgttgggtcggcaaagagcccttccaacgact
actgcccctgagtcagccatcatccgcctattgatgcatgttataaattctgtactcaca
tcctgcaagtga
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integrated database retrieval system
