Zingiber officinale (ginger): 121968612
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Entry
121968612 CDS
T08725
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121968612
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121968612
04121 Ubiquitin system [BR:
zof04121
]
121968612
03036 Chromosome and associated proteins [BR:
zof03036
]
121968612
03400 DNA repair and recombination proteins [BR:
zof03400
]
121968612
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
121968612
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
121968612
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
121968612
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
121968612
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
BRCT_2
zf-HC5HC2H_2
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_3
zf-C3HC4_4
zf-C3HC4_2
PTCB-BRCT
zf-RING_2
zf-RING_5
zf-RING_6
PHD_NSD
Prok-RING_4
zf-RING_10
RTT107_BRCT_5
U-box
zf-P11
zf-Nse
Motif
Other DBs
NCBI-GeneID:
121968612
NCBI-ProteinID:
XP_042374861
LinkDB
All DBs
Position
3B:complement(128214760..128218977)
Genome browser
AA seq
639 aa
AA seq
DB search
MEDLGAFRRFANPLLFNLQKLELELTCAICLRLLRMPMLLPCNHMYCRSCITTTTRNTQD
CAVCKAPFSKQDLRTAGHIEAIAHICKNMTSTVNAVVNQGPQVAISDTKMHSANVRLDSG
NNNLAEKFGQLTDIIDKKRPCHVKSTATLFGYMNPLENKFEGKLHEHKLNADEKVSEEAE
INKFLAPGDTFSPQSSGCQKYSENDSYDGRSEPTTGQLPITESFKRAADNETCLMENGFL
VESKKQRLNKDNDHMHEKLINCAFCHTSIATEGSGPMLHYLNGEPMQEEQASQPNVLHVH
QKCIEWAPQVYFVDETAMNLEAELSRASKIKCSQCGLKGAALGCYNKSCRRSYHVPCADE
ISDCRWDYEKFLLLCPMHSSHRLPCDKSTNKKKTSANATLCHSNPMDQPPCTKHFGGTWT
ASPCVTREWILCGSALSREEKNTLNEFVTLSGASTTSVWNSSITHVIAATDEHGACSRTL
KVLMAILGGKWVLRVDWLKTCMEAGHPVAEEPYEITHDIHGSFDGPRNGRLRASQKAPKV
FSSLSFYFNGYFMPNYKKYLETLISAAGGRFLEGSEVVTTTLIVYSAEPPQGSDPSDLNG
VIKRRREEAESFAANTSSRVIPHTWLLDAIASCNLPQIV
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atggaggatttgggagctttcaggcgatttgcaaaccctttacttttcaatctccagaag
ttggagttggagctgacttgcgccatatgcttaagactgctcagaatgccaatgttgtta
ccatgtaaccatatgtactgcagatcttgtattactactaccacaagaaatacacaagac
tgtgctgtgtgtaaagcacctttttctaaacaagacttaaggactgcaggccatattgaa
gcgattgcacatatttgcaaaaacatgacttctacagttaatgctgttgtgaatcaaggt
ccgcaagttgctatttctgacacaaagatgcattcagcaaatgtaaggctagattctggc
aacaataacttggcagaaaaatttggacaacttacagatatcatagataagaaaaggcca
tgtcatgtcaagtctactgcaacattgtttggatatatgaatccattagaaaataagttt
gagggaaaactacatgaacacaagctgaatgcagatgagaaagtcagcgaagaagctgag
atcaataagttccttgcaccaggggatacattcagtcctcaatcttcaggttgtcaaaaa
tattcagagaatgacagctatgatggacgaagtgaaccaaccactggacaattgcctatc
acagagtcattcaagagagctgcagataatgaaacctgcctgatggaaaatggctttttg
gtcgagtcaaaaaagcaaaggttaaacaaggataatgatcacatgcacgaaaaacttata
aattgtgcattttgccacacttcaatagccaccgagggatctggaccaatgttacattat
cttaatggagaaccaatgcaagaggagcaagcgtcacaacccaatgtcctgcatgtccat
caaaaatgtatagaatgggcaccacaagtttattttgttgatgagactgctatgaatttg
gaggccgagctgtcacgcgcatcaaagatcaaatgcagtcagtgtggcttaaagggagct
gcactcgggtgttacaacaagagttgcagaagaagttatcacgttccttgtgctgatgag
atctcagactgcagatgggactatgagaaatttcttttgctttgtccaatgcactcttca
catagacttccatgcgataaatccactaacaagaaaaagacatcagcaaacgccacatta
tgccattccaatccgatggatcagcctccgtgcacaaagcatttcggaggaacttggact
gcatctccatgtgtaacaagagaatggatactttgtggatctgccttgtccagggaggag
aagaacacgctgaatgaatttgtaacattatccggagcttctacaaccagcgtatggaat
tccagcataacacacgtgatcgctgccacggatgagcatggtgcttgcagcagaacgctc
aaagttcttatggccatcttgggtgggaagtgggttctacgtgttgactggcttaagacc
tgcatggaggctggtcatccagtggcggaggaaccttatgaaatcacccacgacattcat
ggatcatttgatggaccaagaaatgggcgactaagagcttctcaaaaggcaccaaaagtg
ttttcaagtctgtccttttactttaatggttattttatgccaaactacaagaaatatctt
gagactttgatttctgctgccggtggaagatttctggagggaagtgaggttgtgacaaca
actttgatagtttatagtgcagagcctccgcaaggaagcgacccaagtgacctgaatgga
gtgatcaagaggagaagagaagaagctgagagttttgcagccaacacttcctctcgggtg
attccacatacgtggcttttggatgccattgcttcctgcaatctgccacaaattgtgtga
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