Zingiber officinale (ginger): 121969324
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Entry
121969324 CDS
T08725
Name
(RefSeq) transcription initiation factor IIF subunit alpha-like
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121969324
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
121969324
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
121969324
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
DZR_2
zf-C3HC4_3
DUF7563
DUF1258
Motif
Other DBs
NCBI-GeneID:
121969324
NCBI-ProteinID:
XP_042375285
LinkDB
All DBs
Position
4A:complement(3762136..3775514)
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AA seq
536 aa
AA seq
DB search
MSFDLVLKPCCSGCGSASDLYGSGCKHTTLCLSCGKSMAANRGRCQHCGAFITQLIREYN
VRASASTDKAFYIGRYVSGLPPFSKNSAENRWSLHKEGLQGRQLTDTLREKYKNKPWILE
DETGQFQFQGQLEGSQSSTATYFLLMMQGKEFLAFPAGSWYNFTKIAQYKQLTLEEAEEK
MNKRRHNATGYERWMMKAAINGAAAFGELKKNEGITKAEAEGSNKAKKGKSNDEGDHSDK
GDEDEEEEEARKNRLGLNKKGVDDDEEGAKGGDFDLDDDDIEKGDDWEHEETFTDDDEAV
GNDPEEREDLAPEIPAPPEIKQDEEDEDEEDGGLSKSGKELKKLLGKAAGLNESEGEEEE
EEDDDDEIGMSPVLAPKQKDTPKDEPVVSTPSRATPPPVSGRSTPSASKSSKAKRKPGSD
EKSSSSNNSVPAKKVKLENSIVKDEPVNSSKPSVSTKPPSTTARPGSSTPSTAAVTEEEI
RAVVAAGGPVTTQDLVAKFKSRLKAPEDKKIFADILRRISKIQKVNGHNYVVIRDK
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgagcttcgacttggtgctgaagccatgctgcagtggctgcggctcggcgtccgacctc
tacgggagcggttgcaagcacaccacgctgtgtctttcatgcggcaagagcatggcggcc
aatcgcggccgctgccagcattgcggcgccttcatcacccaattgatccgggagtacaat
gtacgggcaagtgctagcactgataaggctttctatattggaaggtatgtctccggcttg
cctccattttcaaagaatagtgcagaaaataggtggtctctccacaaagaaggtcttcag
ggacgtcaactaactgacactttgcgggagaaatacaagaacaaaccgtggatattggaa
gatgaaactggccagtttcagtttcagggtcaattggagggctcacaatcttcaactgct
acttattttctgttaatgatgcaaggaaaggagtttcttgcttttccagctggttcctgg
tacaattttaccaagattgcacaatacaaacaattgactttagaagaggctgaagagaaa
atgaacaaaaggaggcataatgcaactggatatgagaggtggatgatgaaggcagcaatt
aatggcgctgctgcttttggtgaattgaagaaaaatgaaggtatcaccaaagctgaggct
gagggaagcaataaagcaaagaaagggaagagcaatgatgaaggagatcactctgacaag
ggcgatgaagatgaggaagaagaggaggcaagaaagaataggcttggacttaacaaaaag
ggtgttgatgatgatgaagaaggtgctaaaggaggtgattttgatttagatgatgatgac
atcgaaaaaggtgatgactgggaacatgaagagaccttcacagatgatgatgaagctgtc
ggtaatgatcctgaggaaagagaagatttagctcccgagattcctgctccacccgaaatt
aagcaggatgaggaggatgaggatgaagaagatggtggtctgagtaaatcagggaaggag
ttaaagaaactgcttggaaaagctgctggattaaatgaatctgagggtgaggaggaggaa
gaagaagatgatgatgatgaaattggcatgtcccctgtgttagcaccaaaacaaaaagat
actccgaaggatgaaccagtagtaagtactccctccagggcaacacctcccccagtatct
ggccggtccactccatctgcatctaaatcatcaaaagcaaagaggaaacctggtagcgac
gagaagagtagtagtagtaataattctgtgcctgcaaagaaggtgaagctggaaaattca
attgttaaagatgagcctgtcaattcatctaaacctagtgtgtccacaaaaccaccatct
acaactgctagacctggttcatcgacaccttctacagcagcagtcactgaggaggaaatt
agagctgttgttgctgctggtggtcctgtgacgacacaggatttagttgcaaaattcaaa
tccagactgaaagctccggaggacaagaaaatctttgctgacattctccgcagaatatcc
aagatacagaaggtcaatggtcataactacgttgtgatcagagacaaatag
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