Zingiber officinale (ginger): 121969326
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Entry
121969326 CDS
T08725
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121969326
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121969326
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121969326
mRNA degradation factors
5'-3' decay
Decapping complex
121969326
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
121969326
NCBI-ProteinID:
XP_042375291
LinkDB
All DBs
Position
1B:87803108..87818780
Genome browser
AA seq
796 aa
AA seq
DB search
MEGLDAEGNLRIDGIGKYSAGGSDNILFDASQYSFFGKDDMEEVVLGGLEDDDYFGSLVG
LEQSKFSSLGDKEIESLGSLSEIDDLATTFRKLNRVVNEPRSVGVIGDRGSFSRENSSNA
DWIQETDFPRWIDHQILDVEDVQENKRWSSQPLVTPSQFDELKPLYRTSSHPHQLQHLHS
VESISVPKSSFTSYPPPGGQSLPLTRHSSLPSVGIADQISGPLPYSSSLNQLGGLHPGLH
YHPSMQFKHPGVSSTSMPRNYLINHSDLFVRENHGLLPNLFPQHLLPQGGLISPQFLSQQ
QQQRLLQQSLANFSHLQSNLFNRYNHPHMMNNFESVSGMPHFRDNRSKSSHRGKHMSQQS
ETGSSKSDSGFQFRSKYMSGQEIESILKMQHAATHITDPYHDDYYHQACLAKKSSSLRLK
HRFCPSAIKDPPSRSRSNNESHAYVQVDGLGRVPLSSVRRPRPLLEVDMPSASSDDQKSS
IKPLEQEPMLAARITIEDCIGLLLDVDDIDRVLQANQPQDGGLQLKRRRQVLLDVIAGSL
QLVDPFGAGKSDNSTAFAPKDDLVFLRVVSLAKGRKLISRYLHLLLPGSHPTRVVCMAIF
RHLRILFGGLPTDPSAAETTINLSKTVSSCMHNMELSALGACLAAVVCSSEQPPLRPIGS
SAGDGASIIIKCVLNRATELLMDPHAASNYSFSNRTLWQASFDAFFGLLTTYCLSKYDSI
MQMLLVQAAGTTIIGPEANITISKEMPVELLRASLPHTNEHQRKIILEFAQRSMPITDAG
THGGQNRPENSESVPG
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atggaagggcttgatgcggaaggaaacctcaggatcgatggcatcgggaaatactctgcc
ggtggatcagataatattctgtttgatgcttcacagtattcattctttggtaaggatgac
atggaggaagttgtgttaggtggtttggaagatgatgattactttggaagtcttgttggt
cttgagcaatccaagttctcttctcttggtgataaagaaattgaaagcttagggtcctta
tccgagattgatgaccttgcaacaacctttagaaagctgaacagagttgtcaatgaacca
aggagtgtaggcgttattggtgatagaggttctttttctagagaaaattcttctaatgcg
gactggatacaagaaactgattttccaagatggattgatcaccagatattggatgttgaa
gatgttcaggagaacaaacggtggtcgtcacagccacttgttactccatctcagtttgat
gaactaaagccgctgtatcgtacttcttctcatccacaccaactgcagcatcttcactct
gttgaatccatctctgtccccaagtcatctttcacttcctaccctccaccagggggacaa
agtctacctctaactcgccattcaagtttgccatctgtgggtatagcagaccagatatct
ggtccgctgccttattctagttctctaaatcagttgggaggattgcatcctgggctgcac
tatcatccaagtatgcagttcaaacatcctggtgtctcatctactagcatgcctagaaat
tacttgatcaatcattctgacctctttgtaagggagaatcacggcctgttgcctaattta
tttcctcaacatttacttccgcaaggtggtttaatttcaccacagtttttgtcacagcaa
caacagcagagattgctccagcaatctcttgccaatttctcccacctgcaatctaactta
ttcaaccgatataatcaccctcacatgatgaacaactttgagtcagttagtggtatgcct
cattttagagacaatagatcaaaatcatctcacagagggaaacacatgtctcaacagtca
gagactggcagctcgaagagtgatagtggttttcaattcagatcaaagtacatgtccggc
caagaaatagaaagcattttgaaaatgcagcatgcggcaacacatatcactgacccttac
catgatgattactaccatcaagcttgtcttgcaaaaaagtcatctagtttaagacttaag
catcggttttgtccatcagcaataaaggatcctccatcacggtcacgttctaataatgaa
tcccatgcatatgttcaggttgatggacttgggagagttccattatcttcagttcgcagg
cctcgccctctccttgaggttgatatgccatctgcatcaagtgatgatcagaaatcctct
ataaagcctcttgaacaggagcctatgttggctgcgagaatcacaattgaagattgtatt
ggccttctcctggatgtggatgatatcgatcgagttctacaagctaaccaaccacaagat
ggtgggttgcaactgaagaggagaaggcaggttcttcttgatgtcattgctggatcactc
caacttgttgatccatttggtgctggtaaatctgataactcaacagctttcgccccaaag
gatgaccttgttttcttacgtgtcgtttctcttgcaaaaggcagaaagctcatatcacgc
tatcttcaccttctacttcctggaagccatccaactagagtagtctgtatggccattttc
cgccaccttaggattttgtttggtggtctaccaacagatcccagtgcagcagaaacaacc
atcaatctgtccaaaactgtgtcttcatgtatgcacaatatggaacttagcgcacttggt
gcttgcctagctgcagtagtatgttcatctgaacaaccaccactccgtcctattgggagt
tcagctggtgatggagccagcataattataaagtgtgttctcaatagagctacggaactt
ctgatggaccctcatgctgcaagcaactacagtttttccaaccgaaccctatggcaggca
tcatttgatgctttctttgggcttctaactacatattgcctgagcaaatacgacagtata
atgcaaatgctgcttgtgcaagcagctggtactacaattataggccctgaagccaacatc
actattagcaaagagatgcctgtggagctgttacgtgcaagtcttcctcacaccaacgaa
catcagcggaagataatacttgagtttgcccagaggtccatgcctattactgacgctggt
actcatggaggtcagaacaggcctgaaaattccgagtcagttccaggatga
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