Zingiber officinale (ginger): 121969355
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Entry
121969355 CDS
T08725
Name
(RefSeq) E3 ubiquitin-protein ligase listerin-like isoform X1
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zof03009
]
121969355
04121 Ubiquitin system [BR:
zof04121
]
121969355
Enzymes [BR:
zof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121969355
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
121969355
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121969355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ltn1_1st
LTN1_E3_ligase_6th
UBC_like
zf-RING_2
HEAT_GCN1
zf-rbx1
FANCL_C
MyTH4
zf-ANAPC11
zf-C3HC4
zf-RING_16
zf-C3HC4_2
RINGv
zf-RING-like
ParcG
Motif
Other DBs
NCBI-GeneID:
121969355
NCBI-ProteinID:
XP_042375338
LinkDB
All DBs
Position
4A:5146355..5175624
Genome browser
AA seq
1920 aa
AA seq
DB search
MGKPKGDGARSKSRPSSSSSAASLLPSGVSTVGFGGYLGSSRVDSSSLAEDSVAFLDVDS
EMTQHLKRLGRKDPTTKLKALTTLAVLFKEKPTEELVQIIPQWAFEYRKLLHDFNREARR
ATHDTMTALVMAIRKGLAPHLKSLMGPWWFSQFDPVPEVSLAARLSLEAAFPMQERRLDA
LMFCVNEIFLYLDENLKLTPQTMFDKAIPADELEDMHQRAISSSLLAIATLIDILLVVKM
PNSDNGNCSPEQKLVSRARTAAVSSVENLLAMHKCFLQHMKSKHPSVRTATYSIIASIIK
NIPHVLNEENVKVLSTAILGVLQEKDASCHSSMWDMLLLFSKKIPNGWSYCNTQKVVLNR
FWHFLRNGCHGSQQVSYPVLVLFLDSIPTDVNLGEQFVDYFFQNLWAGRYSSCHSLADSK
ALFGAFKECFLWVLHHVSRYCKTTDDQSELPIKLINDIFVELLLNDYLLSASVKKRDESS
QARSDISTDGGSSLSHERPQQRVNSSHQAFFTEELLRCIIGILLEISQEDQNLTCVFCTS
FQKDCLEIIREGDSLQNFPECIERIVRFFLAIDKCILLKGHDWPLHFLGRPLFFTTFPVI
KSMDSLDAVKLLSILVEIFGPDQIFSEFDSPNAMDIETKTKHFFHTFNNDFIPWCLEGVG
SFGNLKLDFLLDLFQDDYFFQQWCAVITYCVDDTKFTETSDNISNIQVLAILIGKVRERI
RSKKLGRLRKFGLSPEHWHHDLLNSSAISFAHQTSMINCHAQFLCAVLGGSAEDDQLCFL
SKETLIIVWEGILRKMTSLLTSSSFHWVHFACSLILGSDHNDFLKLQEASFSMKVAMAQF
SFEVLKGSIFCLKIIDDSCTLVSSLLATLFVLDWENCMMALTCTNDKFDCSKYAGDIDNS
LLETEVLGNEEQVDAKLALGRKFCAYRRKITPNFLKNTSRETQSRFQNILVKIVRFALLD
SDDLVSPKESISFCEWVLDMAEIICDTRKEMQILLDQLFQEGKSWPFWVKSLIDSGNRVA
TFQRETASLSVNEHHNHSFVAFADKLVSRLGVDVVIAGLTEISIGSSRIEVVSGFSSPYK
REWLAAEIISSWEWQVSNATEAFLPLLSKYARTETSTLEANILFSIINTLIDGAITHETH
DHWASFDSWRVLHDEFDKINDPFLRGLVSLLSTLFVKEKVWGKCEAIQLFKQLMDKLYVG
TSVVQYCLRILPFILSIIIPSALENSESDGTTEEILKDSLHENPTRKYVMSWLENSLSFP
SIISAKTEQDVEEWIQAVISCYPLRTTMETGKFEVSLLRNVSNEEATLLLSLFRKQVCFN
DASAATNQKQIILGKLIAVSVGYCWQKFDKDDWSFVLDNSHRWLESSVLLLEEITDSIDD
AIVNHTIINGLECTQKKLEISLQNYDPWIFHLSTAALVTLCLLSQPEEHEKTDSTEALHH
IKLGKWAAMKDQTMASILRLFFATGASEAIANSCNGNLSNVVASSRLMQSHFWGMIASFV
WNSPKLVRSAAVESMKLWGLSKDSISSLYAILFSSRPISSLQFAAYCLLSSEPLCHLSVA
SEGSLEGEGSSFMESELSLDVESSSEETFCLRDEISFLIQRQSADLPEMDLISQERVNVF
IAWALLLSCLNSFSPSSKAREKMVQYIQDSVSSTILDCIFQHIPLKSGANNVKKKEIELA
VEASNAANAARHSITTCSLELYVQSLWPVRIDTMASLAGSIYGMMIHLLPSYVRNWFSSL
RDRSLSSAVESFTKAWCSPPLLLDELSQVKETVFADDNFSVSVNRSASEIIATYKKEETG
MDLVIHLPSSYPLRPVDVECARSLGISEVKQRKWLLSLTAFVRNQNGAIAEAIRIWKSNF
DKEFLGVEECPICYSINHTTNHSLPRLACKTCKHKFHSACLYKWFSTSHKSTCPLCQSPF
NT seq
5763 nt
NT seq
+upstream
nt +downstream
nt
atggggaagccgaagggtgatggtgcgaggagcaagtcgcgtccttctagcagcagctcg
gctgcttctttgctgccctcgggtgtctcgactgttggattcggcggttacttggggagt
tctcgagttgattcctcttcgttagctgaggattctgtggcctttttggatgttgacagt
gaaatgacacaacatttgaagcggcttggaaggaaagatccgacaacaaagctaaaagct
ctgacaacattggcagttctttttaaggaaaaacctactgaagaattagtgcaaattatt
ccacaatgggcatttgaatacaggaagttattgcatgattttaatagagaggcccgccga
gctacgcatgacacaatgactgctcttgttatggccattaggaaaggattggctccacat
ttgaaatctttgatgggtccttggtggttttctcaatttgatccagttccagaagtttct
ctggctgctaggctgtctttagaggcagcctttccaatgcaagaacgaaggctggatgct
ttgatgttttgtgtaaatgagatttttctctatttagatgaaaatttgaaattaacacca
caaacgatgtttgataaagccatacctgctgatgagttggaagatatgcaccaaagagca
atttcatcttcattattggcaatagcaacccttattgacattttactggttgtaaaaatg
ccaaactctgataatggaaattgttcgcctgaacaaaagcttgtatccagagcaaggact
gctgcagtatcttctgttgaaaatctgcttgctatgcataagtgttttcttcaacatatg
aaatccaagcatcccagtgttcgtacagctacatattctatcatagctagcattataaaa
aatatcccacatgtcttgaatgaagaaaatgtgaaggtgctttcaactgccatacttggt
gttttacaagagaaggatgcatcttgccattcgtccatgtgggatatgttattgctcttt
tcaaaaaaaatcccaaatggttggtcatattgtaacacccagaaagttgttctcaacaga
ttttggcatttcttaagaaacggatgtcatggatcacaacaagtttcatatccagtactt
gtgctattcttggattcaataccgactgatgtaaaccttggcgagcaatttgttgattat
tttttccaaaatctttgggctggaagatattcttcatgccactcacttgctgatagcaag
gctttatttggtgcatttaaagaatgttttctctgggtgttacatcatgtatcaagatat
tgtaaaacaacagatgaccaaagtgaacttcctatcaagttgataaatgatatttttgta
gaactattattgaatgactatctgctgtcagctagcgtgaaaaagcgagatgaaagttca
caagcaaggtctgatatctcaactgatggtggcagttcgctgtctcatgaaaggccacaa
cagagagttaatagtagccatcaagcgttttttactgaagagttattgaggtgtattatt
ggaattctattagagatctcccaagaggatcaaaatttgacatgtgttttctgtacatcc
tttcagaaggactgtcttgaaattattcgagaaggggattccttgcaaaattttcctgag
tgtatagaaagaattgtcagattttttctagcaattgataagtgtattttgctgaaaggt
catgattggcctttgcactttttaggccgaccgctattttttaccaccttccctgtgatt
aagtctatggattctctggatgcagtcaagcttctgtccatcttggttgaaatatttgga
cccgatcaaatattctcagagtttgatagcccaaatgcaatggatattgaaaccaagacg
aagcatttttttcatacattcaataatgactttattccatggtgtttagaaggagttggt
agtttcggaaatctaaaactagattttctgctcgatttgtttcaagatgactattttttt
cagcaatggtgtgcagttatcacctattgtgtagatgatacaaaattcactgaaacctca
gacaacattagtaatattcaggtgcttgctattctcattgggaaggtcagggaaagaatt
aggagcaagaagctgggaaggctgcgaaagtttggcttgtcaccagaacattggcaccac
gacttgctaaattcatctgcaataagttttgctcaccagacttccatgataaactgtcat
gctcaatttctatgtgccgtacttggagggtcagccgaagatgatcagctttgctttttg
tctaaagaaactttaattattgtctgggagggaattttgagaaaaatgacatcacttctt
acttcgtcatcatttcattgggttcattttgcatgctctttgattctaggttctgaccac
aatgattttcttaagctgcaagaagcatctttctcaatgaaggttgcaatggctcaattt
tcttttgaagttctcaagggtagcatattttgcttgaagataattgatgatagttgcacc
ttagtttcttcactcttagcaaccctatttgttcttgattgggaaaattgcatgatggct
ctgacttgtactaatgataaatttgattgttcaaaatatgctggtgatattgataattct
ctgttggaaactgaagttcttggcaatgaggagcaggttgatgccaagttggctttggga
agaaaattttgtgcctatcgccgtaagataactcctaatttcttgaaaaacacaagtcgc
gagacacaatcaagatttcaaaacattttagtgaaaatagtaaggtttgcattactagac
tcagatgatttagtttctccaaaagaatctatttcattctgtgaatgggtgttagatatg
gcagaaataatatgcgacactagaaaagagatgcagattttgttggaccaattattccaa
gagggaaaatcttggcctttctgggttaaatcactcattgacagtgggaacagagttgca
actttccagcgtgagacagcttcattgagtgttaatgaacaccataatcacagttttgtt
gcttttgctgacaagcttgtttcaagacttggagtcgatgtggtaattgcaggtcttaca
gagatttctattggctcatcacgcattgaggttgtttcaggattttcatctccttacaaa
cgtgagtggcttgctgctgaaataatttcttcatgggagtggcaagtgagtaatgcaaca
gaggctttcttacctttgcttagcaaatatgcaagaactgaaacctctactcttgaagct
aatattttgttctctattattaacacattaattgatggagctattacacatgaaactcat
gatcactgggcatcttttgattcatggagggttctgcatgatgaatttgataaaatcaat
gatccatttctccgtggcctagtttccttgctctctactttgtttgtcaaggaaaaagtc
tggggaaagtgtgaggccattcaattatttaaacagcttatggataaactttatgttggc
acttctgtagtgcagtattgccttagaattcttcctttcattttaagtattattatacca
tcagcactagaaaactcagaatctgatggcacaactgaagaaattttgaaagattctcta
cacgaaaacccaacaaggaaatatgtcatgagttggcttgaaaactccctttcctttcct
tcaataatctcagccaaaacagaacaagacgttgaagaatggatccaggccgttatatca
tgttatccattgaggacaacaatggaaactgggaaatttgaagtaagtttattgaggaat
gtgagcaatgaggaggcaactttgcttctgagtttattcagaaagcaagtatgctttaat
gatgcttctgcagccactaatcagaagcagattattttagggaaactaatagctgtttcc
gttgggtattgctggcaaaaatttgataaagatgactggagttttgtgttagataattca
cataggtggttggagtcatctgttttgttgctggaagagataactgatagcattgatgat
gcaatagttaaccacacaattataaatggcttagaatgtactcaaaagaagctcgaaatc
tctcttcagaattatgatccatggatatttcatttatcaactgccgcattagttacatta
tgtcttctctcacaaccggaagaacatgaaaaaacagatagtacagaggctttgcatcac
ataaaacttggaaagtgggctgcaatgaaagatcaaaccatggcaagtatcttacgcttg
ttttttgcaactggagctagtgaggctattgcaaactcatgtaatggaaatttatcgaat
gttgttgcttcaagtaggctgatgcaatcacatttttggggtatgatagcatcatttgtt
tggaattctcctaagctagtgagaagtgcagcagtggagtcaatgaaactttggggtctt
agcaaggattccataagttcattgtatgctattcttttctcctcaagaccaatctcatcg
ttacagtttgcagcttattgtctactctcttctgagcctctatgtcatttgtcagttgca
tcagaaggtagtctggagggagaaggtagctcatttatggagtcagaactctcattggat
gtggaatcatccagcgaagaaactttttgtttgagagatgagatatcctttctcatacag
agacaaagtgctgacctcccagagatggacttgatatctcaagagagggtgaatgtattt
atagcctgggcacttttgctttcttgtctaaattcattttctccttcatccaaggctagg
gaaaaaatggttcaatacatacaggactcagttagttcaacgatattagattgcattttc
cagcatattcctttgaagagcggagcaaataatgtaaagaaaaaggaaattgaacttgca
gtcgaagcttctaatgctgctaatgctgctagacattcaattactacatgctctctagaa
ttatatgtacaatcactctggcctgttaggattgatacaatggcctcactggctggttca
atatatggaatgatgattcatcttcttccctcttatgttcgtaattggttttctagtctg
cgcgatcgctctctgtcatctgctgttgaatcttttacaaaagcttggtgcagtcctcct
cttcttttggatgaactttcccaggtcaaagagactgtctttgctgatgacaacttctca
gtgagtgttaataggtcagcttctgagataattgctacttataaaaaggaggagactggg
atggatcttgtgattcaccttccaagttcctatcccttgcgccctgtggatgttgaatgc
gcgagaagtttgggaattagtgaagtaaaacaacgcaaatggttgctgtctttgacagca
tttgttcgcaatcagaatggtgcaattgctgaggcaattcggatatggaaaagcaatttt
gacaaagaatttcttggtgttgaagaatgccctatctgttacagcataaaccacacaaca
aatcacagtcttcctaggctcgcttgcaaaacttgcaagcacaagtttcactctgcttgc
ctttacaagtggttctcaacttctcataaatcaacttgcccattgtgtcagtcccccttc
tga
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