Zingiber officinale (ginger): 121969370
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Entry
121969370 CDS
T08725
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121969370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121969370
Enzymes [BR:
zof01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
121969370
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
121969370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
121969370
NCBI-ProteinID:
XP_042375373
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All DBs
Position
4A:complement(5438979..5444204)
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AA seq
712 aa
AA seq
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MRNLPFVWVRYRTLTLDLLPRLRPFSTDAPGGGSVAVKQVTRSNFNAALEGLRACVEESD
FVAVDLEMTGVTSAPWRDSFEFDRSDVRYLKLKDSAEKFAVVQFGVCPFRWDSSKGSFFA
HPHNFYIFPRKELPLHGPPDDFLWQATSIDFLAKYQFDFNACIYEGISYLSREQEGEALK
GLSSEYLEGLANSFCNFEEPVDIPIARTSDILFSERMKNKLHKWHDSILRSPDKAYIDKE
DAGINNAQFQTVFFKMRPAIMLNGFTSHQLKLIQLVVKKHFNDLMYVRVVDEDNSWQRRV
VYVDTNEDKALLMKDVLEDLRKNAEKRIKSSVGFRHVVDLLASAGKLIVGHNCLLDLAHI
YNKFFGPLPSSLTEFVQAVHEKFPHIVDTKHLLNSNQTIQSLMKKNRKSLSSAFSLLCPN
VSSNFQTTSKSYLRFEVQTDEISSSCFNSGAKHEAGYDAFMTGCVFARACSLMGVKFDVG
SPSFDLPRNAKINKYINVLYPSWNSGTVVHLDTGTEFLDPNYKHRYPPVIYANTTLIWGF
LPKLKPKDLKECIIKVFGLDSVKSVFFIDRTSALIQFGKEEFVHKFLALKNSLEDNHDLV
SVLHPLSKLLEGGNTRAADYDTYRDICAGSASKVLFADQADSLGITWKTKVCAARMQDTE
DVCCRETTEDGSLAKHSNGKKNDFKRQSKHQSSYEEIIGSLFSSKTLLERAS
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgcggaatctgccgtttgtttgggtgcgctaccgaaccctaaccctagacctgctgcct
cgcctccgtcccttctccaccgatgcgcccggtggcggcagcgtggccgtgaagcaggtg
acgaggtccaatttcaacgcggcgctggagggccttagggcctgcgtggaggagtcggac
ttcgtggccgttgaccttgagatgaccggcgtgacgagtgccccatggagggactcgttc
gagttcgaccgctccgatgtccgttaccttaagctgaaggactccgctgagaagttcgcc
gtcgtgcagttcggtgtctgccccttccgctgggattcatccaagggctccttcttcgcc
catccgcataacttctatatctttccacggaaagagttgccacttcatgggccacctgat
gatttcctatggcaagcaacatccatcgacttccttgccaaataccaatttgacttcaat
gcatgcatatatgaaggaatatcttatttatccagagaacaagaaggagaagccctcaaa
ggtttatcttcagagtaccttgagggattagctaattccttttgtaattttgaggagcct
gtggatataccaattgcgagaacatctgacattcttttttcggagaggatgaagaacaag
cttcataaatggcatgattctatacttagaagtcctgacaaagcttacattgacaaagaa
gatgctggtatcaacaacgcacaatttcaaacagttttctttaagatgcgtcctgctatc
atgctaaatgggtttacctcccaccagctgaagttgattcaactggttgtgaaaaagcac
ttcaatgacctcatgtatgttcgtgttgttgatgaggacaactcatggcaaaggagggta
gtctatgtcgacacaaatgaagataaggctttattgatgaaagatgtccttgaagatctg
agaaaaaatgcagaaaaaagaatcaagtcttctgttggatttcggcatgttgttgatctt
cttgcatcagcaggaaaattgattgttggtcataattgtcttctagatttagctcatata
tacaacaaattttttggtcctcttccttcatctttgacggaatttgtgcaagctgtccat
gaaaaattcccccacattgttgacactaagcaccttttgaactcaaaccaaacaattcag
agtttgatgaaaaagaatcgcaagtcattgtcttctgccttctctcttttatgccccaac
gtatcatctaatttccagaccacttccaagtcttacttgagatttgaggtccaaacagat
gaaattagttcatcttgcttcaattctggcgcgaagcatgaggcaggttatgatgctttt
atgactggatgcgtttttgctcgggcctgctctcttatgggcgtcaaatttgatgtcggt
tcaccatcattcgatctgcccagaaatgccaagatcaataaatacatcaatgttctatac
cctagctggaacagtgggacagtagtccatttagatactggcactgagtttctggatcca
aattataaacataggtatccgccagtgatctatgcgaacaccacacttatttggggattt
ctgcccaagttgaagccaaaggatttgaaggagtgcatcattaaagtgttcggtctagat
tcagtcaagtcagtattctttatcgatagaacatctgcgctaatccaattcggcaaggag
gaatttgtacataaatttttagctttgaagaattctttagaggacaatcatgatctagtt
tcagtactacaccctctttcaaagttactagaaggtgggaacacacgagctgctgattac
gatacttacagagacatctgtgctggttctgcttcaaaggttttatttgcagatcaagcc
gattccttgggcatcacctggaaaacaaaagtctgcgctgccagaatgcaagacactgag
gatgtttgctgtcgcgaaacaacggaagacggttctctggcaaaacattcaaatgggaag
aaaaatgatttcaaaaggcaatcgaagcaccagtcttcctacgaagagatcataggttct
ctcttttcttccaagacattgcttgaaagagcatcttaa
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