Zingiber officinale (ginger): 121969375
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Entry
121969375 CDS
T08725
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121969375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121969375
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121969375
mRNA degradation factors
5'-3' decay
Decapping complex
121969375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Prp19
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_EML_2
Beta-prop_Vps41
Beta-prop_TEP1_C
Beta-prop_HPS5
Beta-prop_RIG_2nd
DeoC
RED_N
DUF445
Motif
Other DBs
NCBI-GeneID:
121969375
NCBI-ProteinID:
XP_042375385
LinkDB
All DBs
Position
4A:5599939..5612493
Genome browser
AA seq
1385 aa
AA seq
DB search
MASPTGSPNTSANYDTQALFKPPNPSPSPGAIPRQPFPPTSAYPSPLPPSTFPAPTHPGG
FSYPPATPPFHHHPFLHYPQESLHRTPAIYPPVSPHLPNPNPSTNPSPSSNTNPGARLMA
LLNPPASSQLESAVSMPPPSSTQLEFLTPSAIGALYPVPSAPPAALAQPAPTRMSSNKLP
RGRLLSAGSRAVYDVDSRLPGEKQPPQLEVTPITKYTSDPGLVLGRQIAVNRTYICYGLK
LGAIRVLNINTALRSLLKGHSQRVTDMAFFAEDVHLLASASIDGRVFVWKIDEGPDEENK
PLITGKVIMAIQIVGDRESYHPRICWHSHKQEILYVGIGVLVLKIDINKVGRGKEFLAEE
PLKCSIEKLIEGVQIIGKHDGEVTDLSISQWMVTRLASSSKDGTVKIWDDRKAVPLSVLR
PHDGHPVNSVEFMTAPNHPEHINLITAGPLSREIKIWASASEEGWLLPSDSESWHCTQML
DLRSSSEPRMEEAFFNQLVVLSQASLIIIANAKKNAIYAVHIDYGPCPASTHMDHIADFT
VAMPILSLTVTHDILAEGDKIVQVYCVQTQAIQQYALDLIQCLPPPIANAGLAKDPSSHV
IEASNSEGLPVPELSSEHYRTNTAMENASPETLLTDGSMDGASAAPALVTTDSSEATGIN
ESSTSNVEVKLISPLLNVDADAIHVASSSGPFNIDITGSSPSLKSPAKTSEDALSLSGHE
TDHSSFEHAIDRGVYSVVTKESTEKDGLNTGQNDISMIFNPPMMFKLGGNSTHLITPSEI
LSGAISTSENSNVNKKLTEEVKGKDLNTGDSIINAEVVEGTTVQQETNTQKVPQDFSALE
LSPQVSIAHSEVDDEAPTVIETSFQVESHPAEDIAIVEAKKHLLTTAKEEGQDRTINATE
DIAEPGVTSVSESLLVSKGKKQKEKQRQTSSPSSSSSSLLHSTYSLNEPAVTESVPSADP
ASLDILALQEMLSQVVNMQKELEKQMGLVVAAPVAKEGKRMETVLSRNIEKMIKANGDAL
WARVQEENAKYEKFEKERMQQITNLITNCVSKDLPTVLERAVKKELSTIGSTVARSIAPS
ISSAIAESFQRGVGDKAVTQLEKSVTSKLEATVARQIQSQFQTSGKQVLQDSLRSCLESS
VVPSFEQSCKAMFEHIENAFQNGMSEHTAAASQQLEAANTPLAATLREAINSTSSITQNL
TTELIDGQRKILALIAAGNTKVLNPLVSQQANGPTAGLPEMVGAHLDPTKELSRLISERK
YEEAFTMALQRSDVSIVSWLCTQVDLQAICSMVPLPLSQGVLLALLQQLACDISNETSRK
VGWMTDVAVAINPADPMIALHVRPIFEQVYSMLGRQRSLPTTAAPESASIRLLMHVINSV
LTSCK
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcccccaccgggagccccaacacctccgcaaactacgacacgcaggccctcttc
aagccccctaaccccagccctagtcccggcgccattccacggcagccgttccctcctact
tctgcctacccgtctccgctaccgccgtcgacgtttccggctccgacgcatcccggaggc
ttctcgtaccccccggctactccgcctttccaccaccatcctttcctccactacccccag
gaatccctccaccgtaccccagccatctacccccctgtgtctccccatcttccgaacccc
aatcccagcactaaccctagtcctagctccaacaccaatcccggtgctcgccttatggcc
ctcctgaaccctcccgcaagttcccaactcgaatctgccgtctcgatgccgcctccttct
tccactcaattggaattcctcaccccttccgctatcggcgcgctttaccctgtgccttca
gccccacctgctgcgctggcacagccagcgccaacgaggatgtcgagcaacaagttgcct
aggggtcggcttctcagcgcagggtcacgtgctgtctatgatgttgattcacgtctgccg
ggagagaagcagccgcctcaacttgaggtgacaccgatcaccaagtatacatctgaccca
gggcttgttttggggcggcaaatcgctgtcaatcgaacctacatatgctatgggcttaag
cttggtgctattcgggtgctcaatatcaacacagctctgagatcgttgctaaaggggcat
tctcagagagttacagacatggctttctttgctgaagatgtgcaccttttagccagtgca
agcattgatggaagggtttttgtgtggaagattgatgaggggcccgatgaggaaaacaag
ccactgattacaggaaaagttataatggctattcaaattgttggcgacagagagtcatat
catccccgaatttgttggcactcgcacaagcaagaaattctgtatgttgggataggggtt
ttagtgctaaaaattgatataaataaagttggaagaggaaaagaatttttggctgaggag
ccactcaaatgctctattgaaaagcttatagaaggagtgcaaattataggtaaacatgat
ggagaagtgacagatttgtccatatcccaatggatggtcactcgtttagcgtcatcctca
aaagacggcacggtaaagatctgggatgaccgtaaagcagtgcccctttcggttttaagg
ccacatgatggccatcctgtcaactcagtggagttcatgacagcacctaaccaccctgaa
cacatcaatctcatcacagctggacctttaagtcgagaaataaaaatttgggcctctgct
agcgaagagggttggctattgcctagtgactctgaatcatggcattgcactcagatgttg
gacttgagaagttcctcagaacctcggatggaagaggcttttttcaatcaattagtagtg
ctgtctcaagcaagccttattataattgctaatgctaagaagaatgctatttatgcagtg
catattgactatggtccatgtcctgcttctacacacatggaccatatagcagacttcact
gtggcaatgcctattttgagtcttactgtaacgcatgatatcctggctgaaggagataaa
attgttcaagtctactgtgtacaaacacaggcaattcaacaatatgctttggatttaatt
cagtgtttaccaccaccgattgctaatgctgggttagcaaaagatccttcatcccatgta
atcgaggcatctaattctgaaggattacctgtgccagagttgtctagtgaacactacaga
actaatactgctatggaaaatgcttcaccagaaacccttcttactgatggtagtatggat
ggtgcatctgcagctccagctcttgtaaccacagattcttctgaggccactggtattaat
gaatcatcgacatcaaatgttgaagttaaactcatttctccacttctgaatgtggatgca
gatgcaattcatgttgcctcatcttcaggtccctttaacatagatataacaggaagttca
ccttctctaaagagccctgcgaaaacttctgaggatgcactgtccttaagtggtcatgaa
actgatcactccagttttgagcatgcaattgacaggggagtatacagtgttgtaacaaaa
gaaagtacagaaaaggatggacttaatactggacagaatgatatatccatgatttttaat
cctcctatgatgtttaaacttggtggaaactcaactcacctaattactccctctgaaatt
ttatctggtgcaatatctacttctgaaaacagtaatgtcaataaaaaacttactgaggag
gtgaaggggaaagacttaaacactggtgacagcattataaatgctgaagtggttgagggt
acgacagttcaacaagaaaccaatactcagaaggtgcctcaagatttttctgctctggag
ctatctccccaggtttctatagctcactcggaggtagatgatgaggctcctactgtaata
gaaacttcctttcaggtagaaagtcacccagctgaggacattgctattgttgaggcaaag
aagcacctgttaactactgctaaggaagaaggacaagatagaacaataaatgcaacagaa
gatattgctgaacctggtgttacttcagtttctgaatctctcctggtttccaaaggtaag
aaacaaaaagaaaaacaacgtcaaacatccagtccttcatcgtcttcctctagccttctc
cattccacctattccttgaatgaaccagcagtcactgagagtgtcccttcagctgatcct
gcttccctggatattcttgctttgcaggaaatgctgagccaggtagtgaatatgcaaaag
gaactggaaaagcagatgggtctagttgtggctgctcctgtagcaaaggaaggaaaacgg
atggagactgtcttgagccgaaatattgagaagatgattaaagctaatggagatgcttta
tgggcacgtgttcaagaagaaaatgcaaaatatgagaagtttgagaaggaacggatgcag
cagatcaccaatctaattaccaactgtgtgagtaaggacttgccaaccgttttagagagg
gcagtgaagaaagaactttctacaatagggtccactgtagctcgttcaattgcaccttct
atttcttcagctatagcagagtcatttcagaggggggttggtgataaagcagtgactcag
ttggagaagtcagtcacttctaaacttgaagctacggttgcaagacaaatccaatcacag
tttcaaacttctgggaagcaggttcttcaggattctcttaggtcctgtttggaatcatca
gtggttccttcttttgagcaatcttgtaaagcaatgtttgagcatattgaaaatgcattc
cagaatggaatgagcgaacacactgctgctgctagtcagcaacttgaggcagcaaataca
cctttagcagctactttgagggaagcaatcaactctacttcttcaatcacccaaaacctc
actactgagttaattgatggtcaacgcaaaattttggctctcattgcggcaggaaacaca
aaggttctaaaccctctggtttctcagcaagctaacggccctacagctggtcttcctgag
atggtcggtgcacatctggatccgacaaaagaactctcgagattaatttcagagcgaaaa
tatgaggaagctttcacaatggcacttcaaagaagtgatgtgtcaatagtgtcttggcta
tgcacacaggtggatttgcaagcaatttgttccatggtgccacttcccctgagtcaaggg
gttcttctagcacttctgcagcaactggcctgtgatatcagcaatgagacatccagaaaa
gttggctggatgactgatgttgctgtagcaatcaacccggctgatccaatgattgcatta
catgtgaggccaatctttgagcaagtctacagcatgttgggtcgccaaagatcccttcca
accactgccgcccctgagtcagccagcatccgcctattgatgcatgttataaattctgtg
cttacctcctgcaagtga
DBGET
integrated database retrieval system
