Zingiber officinale (ginger): 121969462
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Entry
121969462 CDS
T08725
Name
(RefSeq) transcription initiation factor TFIID subunit 4b-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121969462
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
121969462
03036 Chromosome and associated proteins [BR:
zof03036
]
121969462
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
121969462
Coactivators
SAGA/TFTC/STAGA complex
121969462
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
121969462
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
RST
SPMIP10-like
DUF2259
Motif
Other DBs
NCBI-GeneID:
121969462
NCBI-ProteinID:
XP_042375510
LinkDB
All DBs
Position
4A:7490505..7518704
Genome browser
AA seq
949 aa
AA seq
DB search
MGPTIMKLLEEDEDESMHSGADVEALLAALNCDIGDDPAVVAPPLDPDASVLMQASSSAS
EQVIRQWKTPSEVGDDQIGQNEQNQPLQSLEQHSSGGELVQRSSIQPRVEQLNHLSKQDQ
MTFQQEITHSNNCQQQSEANSVKPVDKGPEQSNIPVLDTIADTMLDVAQLSEKQPQQHIV
QQSNSQQTPNIANAAAQPSERQQHIMQQSNSRQTLTSSQSNMALRTTKTASSIPFHMLIQ
ILEPHLDNDRSMQLHSIFNKLRVYNSNNEVSKEDFLRVIRNIVSDQTLRQAAQKAQMQQL
QAQASQNTQSNTNLFSLPAQASSQQVSRGGTQQISGAQSFPALHSLPSQNVIVPASSPGQ
PHVPALHPNTGPREVGIGSNGKGPHLVQNYSNSMNMSSSERDGLMGSTQSINRQQKLQSS
ISVSGSTNSYNTHAYPRPSMNSSTSFRANLESHPRPVSHTQGLVSTLIRPTQPMNTMRMP
AYQQSSNSEAKRPQTDSLANHSTSLPNLIAWQMSAKSSSGLQSTSYVNQEVVDQSSEPPK
VQFSSSETTSFGTSHFNQGNSAFGSSMVITNQVSGSVPSQADQNTQQVTSATVPPPGSTT
KSPLKKPSAGQKKPLDALGSSPLMSSKKQKTAGTSLDQSIEQLNDVTVVSGVNLREEEEQ
LLSGPKEDSRASEATRRFVQEEEDRLILQKAPLQKKISDIMLKCGLKIIGGDVERCLSMC
VEEHLKGLISYLIRLSKQRVDIEKSRHRFVITSDVRRQIFSMNQKAKEEYKTKQVEGTEK
HRNVTDMDGNTEVDAEKDKEDGRSKAVKANKEEDDKLRTTAANVAARAAVGGDDMLSKWQ
LMAERARQKREGFDGASASQLGKSASSKSSLNLGIGSREIHESEKKDSSMPTSGGVRRFG
RNGTLAHPKIARNISVKDVIAALEKEPQMSKSSLIYRLYEKSSGDSPAA
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgggtcctacgatcatgaagcttcttgaagaggatgaggatgagagcatgcactccggt
gctgatgttgaggccttgttggcagcattgaactgtgatattggcgatgatccggctgtg
gttgctccacccttggatcctgatgcaagtgtgttgatgcaagcaagtagttcagcatct
gaacaagtaattagacagtggaaaacacccagtgaagtaggagatgaccagattggacaa
aatgaacaaaaccaacctttacaatcattggagcagcattcgtctgggggagaattggtt
cagagaagttctattcaacctcgagtggagcagctcaatcatctatcgaaacaagatcag
atgacttttcagcaagagatcacgcattcaaataactgtcagcaacagtcagaagctaat
tcagttaaacctgtggacaagggacctgagcaaagtaatataccagtcttggatacaatt
gcagacacaatgttggatgttgcccagctttctgagaagcagccgcagcagcacattgtc
cagcagtcaaacagtcaacaaacccctaacatagcaaatgcagctgctcagccttctgag
aggcaacaacacataatgcagcagtcaaatagccgacaaacactcacttctagtcaatca
aacatggcattaagaactactaaaactgcttcgtccatacctttccacatgctgattcaa
attttagaacctcaccttgacaatgacagatccatgcagctgcattcgatttttaacaaa
ctcagggtatacaattctaataatgaagtcagcaaagaggactttttgagagtgataagg
aatatagttagtgatcagacgcttagacaggctgctcaaaaggcacaaatgcagcagctt
caggcgcaggcttctcagaacacacagtcaaatacaaatctattttcattaccagctcaa
gcttcttctcagcaagtttctcgtggtggtacacagcagatatctggagctcaatcattt
ccagcactccactccttaccatctcagaatgttatagtccctgcatcttctcctggtcaa
cctcatgttcctgctttgcaccctaacacaggtcctcgagaagttgggattggatcaaat
gggaagggcccccatcttgtgcaaaattattctaacagtatgaatatgtccagttctgaa
agggatggattgatgggttcaacacaatcaattaacaggcaacagaagttgcaatcatct
atttcagtgtccggtagcactaatagttataatacccatgcctatcctaggccatctatg
aactcctcgacttctttcagagccaatctagagtcgcatccaagaccagtttcacatact
cagggacttgtttcaacgctaataagaccaactcagcccatgaatacaatgagaatgcct
gcatatcaacaaagttctaatagtgaagccaagagaccgcaaactgattccttggcaaac
cattcaacctccctacctaacctaattgcttggcagatgtcagcaaaaagtagtagtgga
ttacagtcaacttcttatgtcaatcaagaggtggttgatcaatcatctgaacctcctaag
gttcagttttcatcttcagagaccacttcatttggtacatcacattttaaccaagggaat
tcagcatttggttcaagtatggtgataacaaatcaggtttcaggctcagtacctagccaa
gcagatcagaatacacagcaggtgacttctgcaactgtacccccgcctggatcaacgaca
aaatctccattaaagaaaccatctgctgggcagaagaaacctttggatgcactaggctca
tctccgctgatgtccagcaagaagcagaaaactgctggcacttctcttgatcaaagcatt
gagcagctaaatgatgtcactgttgttagtggagttaatttaagggaagaggaggagcag
ctgttatcgggcccaaaagaagacagccgagcttcagaagcaactcgaagatttgtacaa
gaagaagaagacaggttaatattgcagaaggccccccttcaaaaaaagatatcagatatc
atgttgaaatgtggtttgaagattattggtggtgacgtagagcgttgtctatcaatgtgc
gtcgaggagcatttgaaggggttgatatcttatctgataagactgtcaaaacagagagtc
gatattgaaaagtctaggcatcgatttgtcatcacatcagatgttcgacgccagattttt
tcaatgaatcagaaagctaaggaagagtacaaaacaaagcaggttgaagggactgaaaaa
cataggaacgtaactgatatggacggaaatacagaagttgatgcagaaaaggacaaagag
gatggtcgttctaaagccgttaaggctaacaaagaagaagatgataaactaagaacaaca
gctgctaatgtggcagctcgagccgctgttggcggagatgatatgctttcaaagtggcaa
ctcatggctgagcgagctcgtcaaaaacgtgaaggttttgatggggcgtctgcttcccag
ctaggtaaaagtgcaagcagtaaatcttcactgaacttgggaataggttcgagagaaata
cacgaatctgaaaagaaagactcttccatgccaacatctggtggtgtgaggagatttggg
aggaatggcaccctggcacatccaaaaattgcacgcaatatctctgttaaagatgtgatt
gcagcccttgagaaggaaccacagatgtccaaatcatctttgatttatcgcctgtatgag
aaatcatccggcgattctccagcagcttag
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integrated database retrieval system
