Zingiber officinale (ginger): 121969868
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Entry
121969868 CDS
T08725
Name
(RefSeq) ABC transporter B family member 1-like isoform X1
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
121969868
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
zof02000
]
121969868
04147 Exosome [BR:
zof04147
]
121969868
04090 CD molecules [BR:
zof04090
]
121969868
Enzymes [BR:
zof01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
121969868
Transporters [BR:
zof02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
121969868
Exosome [BR:
zof04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
121969868
CD molecules [BR:
zof04090
]
Proteins
121969868
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_16
AAA_22
Zeta_toxin
RsgA_GTPase
AAA_29
nSTAND1
ABC_ATPase
AAA_5
AAA_15
DUF815
DUF87
Rad17
DUF6264
Motif
Other DBs
NCBI-GeneID:
121969868
NCBI-ProteinID:
XP_042376088
LinkDB
All DBs
Position
4A:43209548..43215732
Genome browser
AA seq
1367 aa
AA seq
DB search
MSEQQQQTFQQQEEEMIKGVVVVEEWSQPELQAFRLNSPPHRTPKGEDLLVIEVTERGGS
SAVSRVHMEAADGGNPKAEEPPPPQQPQLPSSASSSSQEDKKPEPPAPTVGFRELFRFAD
GLDCTLMAIGTVGAIVHGCSLPIFLRFFADLVNSFGSNTSDPSTMVREVVKYAFYFLVVG
AAIWASSWAEISCWMWTGERQTTKMRIKYLEAALNQDVRYFDTEVRTSDVLFTINADAVI
VQDAISEKLGNFIHYMATFVSGFVVGFTAAWQLALVTLAVVPLIAVIGGFHATALAKLSS
KSQDALAQASNISEQAVAQIRTVQSFVGETRVFQAYSSALGVAQKIGYRSGFSKGLGLGA
TYFTVFCSYALLLWYGGLLVRHHHTNGGLAISTMFSVMIGGLALGQSAPSMAAFAKARVA
AAKIYRTIDHKPSMDMKNDSGVELGAITGLVELKNVNFAYPSRPDVPVLRDFSLTVAAGK
TIALVGSSGSGKSTVVSLIERFYDPTSGQILFDGHDIKSLKLKWLRQQIGLVSQEPALFA
TTIKENVLLGREDATQVEIEEAARVANAHSFIVKLPDAYESQVGERGMQLSGGQKQRIAI
ARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTICKADVVAVL
QQGSVTEIGTHDELMAKGENGLYAKLIRMQEQAHEAALINARKSSARPSSARNSVSSPII
TRNSSYGRSPYSRRLSDFSTSEFSFSVDPNHRIEKLAFRDQANSFLRLVKMNSPEWSYAL
IGSIGSMVCGSMSAFFAYVLSAVLSAYYAQDYKYMRREIGKYCYLMIGVSSVALLFNTMQ
HFFWDVVGENLTKRVREKMFMSVLRNEIAWFDREENASARIAGRLTSDAHNVRSAIGDRI
SVIVQNTSLMLVAFTAGFILEWRLSLVLVSVFPIVVAATVLQKMFMTGFSGDLEVAHAKA
TQIAGEAIANVRTVAAFSSEEKITQLFATNLQVPLRNCFWKGQIAGSGFGIAQFLLYASY
ALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAEALTLAPDFIKGGRAMRSVFELID
RKTEIEPDDPDATPLPDRIRGEVELKHVDFAYPSCPDMPVFRDLTLRARAGKMLALVGPS
GCGKSSVISLIQRFYEPTSGRVLIDGKDIRKYNLKALRQVISVVPQEPCLFAATIFENIA
YGRESTTEAEAVEAATMANAHKFISALPDGYRTWVGERGVQLSGGQRQRIAIARALVKKA
PIMMLDEATSALDAESERGVQDALERSGIGRTTIVVAHRLATIRNAHVIAVIDDGKVVEQ
GSHSHLLNHHSDGCYARMLQLQRFTNGVAMAAGVPLGPSTSTREATG
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaacagcagcagcagacttttcagcagcaggaagaggagatgataaaaggggtt
gtggtggtggaggaatggagccaacccgagctgcaagccttccgcctcaactcgcctccg
catcgcactccaaaaggcgaggacttgctggtaatcgaagtgacggagagaggaggtagc
tctgctgtctccagagtccacatggaggcggcggatggtgggaatcctaaggcggaggaa
cctccgccgccgcagcagccgcagctgccgtcatcggcctcgagtagcagtcaggaagac
aagaagcctgagccgccggcgccgaccgtcggtttccgcgaacttttccgcttcgctgac
gggctcgattgcacgctgatggccatcggcactgtcggcgccatcgtccatggttgctcc
ctcccaatctttctccgcttcttcgccgatctggtcaattctttcgggtccaacactagc
gatcccagcaccatggtccgcgaggtcgtcaagtacgctttctacttcctcgttgtcggc
gctgcgatttgggcgtcttcctgggccgagatatcgtgctggatgtggacgggcgaacgg
caaaccaccaagatgagaatcaagtacctggaagccgcgctgaaccaggacgtccgctac
ttcgacaccgaggtgcgcacctccgacgtcctcttcaccattaacgccgacgcggtcata
gtgcaggatgccatcagcgagaagcttgggaattttatccactacatggcgacgtttgtg
tccggcttcgtggtgggcttcacggcggcgtggcaactcgcgctcgtcacgctcgccgtc
gtccctctcatcgccgtcatcggcggcttccacgcaaccgcattggccaagctctcgtcc
aagagccaggacgccctcgcccaggctagcaacatctccgagcaggcggtggcacagatc
aggacggtgcagtccttcgttggcgagaccagagtcttccaagcttactcctctgcgctc
ggagtagctcagaagattggctatcggagtggattctccaagggactgggcttgggcgcg
acctacttcactgtcttctgctcctatgccttgctgctctggtacggagggcttctggtg
cgccaccaccacaccaatggcgggctcgccatctctaccatgttctccgtcatgatagga
ggattggctcttgggcaatcggctcctagcatggcagcatttgccaaggcaagggtggct
gcagccaagatttaccgaacgatcgatcacaagccaagcatggacatgaagaacgattca
ggggttgagttgggtgccatcacagggcttgtggagttgaagaatgtgaattttgcttac
ccatcaaggcctgatgtccctgtgctccgagacttctcactcactgttgctgcaggaaag
accattgctttggttggaagcagtggctccggcaagagtacagtggtttccctcattgaa
agattctatgatcccacttcaggacaaattctgtttgatgggcatgacattaagtctcta
aagctaaagtggctcaggcaacagatcggccttgttagccaagagcctgccctttttgca
accaccatcaaagaaaacgttcttctcggcagggaagatgccacacaagtagagatagaa
gaagctgcaagagtggcaaatgctcactccttcattgtgaagctgccagatgcctacgag
tcccaggtcggcgagagagggatgcaactctctggtggacaaaagcagcgcattgccatt
gcgagagcgatgctaaagaacccggcaattcttctactagatgaggcaactagtgctctt
gattctgaatctgagaaacttgtgcaagaggcgctcgatcgatttatgattggccgcaca
acacttgtaattgcccaccgtctgtcaactatttgcaaagctgatgttgttgcagttctc
cagcaagggagcgtcactgagattggcacacacgatgaactcatggccaaaggcgaaaat
ggcctttatgcaaagctaattcgcatgcaggaacaggcccatgaggcagctctaataaat
gccaggaagagcagtgcaaggccttcgagtgctagaaactctgtgagctctccaatcatt
acacggaactcatcatatggccgatcaccatattctcgccgtctctctgacttcagtacg
tctgaattcagcttctcagttgatccaaatcatcgaatcgagaagcttgcatttcgagac
caggccaactcattcctgcggcttgtgaaaatgaattcaccagaatggtcttatgccctc
ataggttcaattggttccatggtgtgcggttcgatgagtgctttctttgcttacgttctt
agtgctgtcctcagtgcctactatgctcaggattataagtacatgcgccgggagattggc
aaatattgctacctcatgatcggtgtttcatctgttgctttgctcttcaatactatgcaa
catttcttctgggatgtggttggagaaaatttaacaaaacgtgtccgagagaagatgttc
atgtctgttctccgaaatgagatagcgtggtttgatagagaggagaacgctagtgctaga
attgcaggaaggttgacatcagatgctcataatgtgcgatctgcaattggagaccgtata
tcagtcattgttcagaatacttcactgatgcttgttgcattcactgctggattcattctc
gaatggcggctatctttggttcttgtttctgtcttccccattgtggttgctgccactgtt
cttcagaaaatgttcatgacgggtttctcaggagatctagaagttgctcatgccaaggct
acacaaattgctggggaggccattgccaatgttcgtacagtcgccgctttcagttcagag
gaaaagatcacccaattgtttgcaaccaacctgcaagttccgctccgcaactgcttctgg
aagggtcagatagcagggagtggttttggaattgcacaattccttctgtatgcctcttat
gccctcggtttgtggtatgcttcatggctggtgaagcatggcatctccgacttttctaag
acaattcgtgtattcatggttcttatggtctcagctaatggtgctgccgaggccctcact
cttgcacctgacttcatcaagggtggacgtgccatgcgatcagtattcgagttaattgac
cgcaaaacagaaattgagcctgatgatcctgatgctactcctttacctgaccgcatccgt
ggggaggtcgagctcaagcatgtagactttgcctacccatcttgcccagacatgcctgtg
ttccgtgatctgacactgcgtgcccgtgccggaaagatgttggctcttgttggcccaagt
ggttgcgggaagagttcagtcatttcgttgattcaaaggttctatgagcccacatcaggc
cgcgtgctcatcgatggaaaagacataaggaaatataacttaaaggcattacggcaagtt
atttcggtggtgcctcaggaaccatgccttttcgctgcaaccatatttgagaacatcgca
tatgggagggaatcaacaacagaggcagaagcagtggaagctgcgacaatggctaatgca
cacaagttcatatcagcattgcccgacgggtataggacatgggtcggagagcgtggggtg
cagctatcagggggacaacggcaaagaatagcaatagcaagggcactagtgaagaaggca
ccaataatgatgttggatgaggcaacaagtgcactagatgcagagtcggagcggggtgtg
caggatgcactcgaacggtctggaattggacggaccacaatcgtggtggcacatcgcctt
gcgaccataaggaacgcccatgtgattgcagtaatcgacgatgggaaagtggtggaacaa
ggatcacattcacacctgctcaaccaccattctgatgggtgctatgcccgaatgctccag
ctgcagcgctttacaaatggagtcgccatggctgccggtgtgccactaggaccatcaacg
agcactagggaagctacaggatag
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