Zingiber officinale (ginger): 121969874
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Entry
121969874 CDS
T08725
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121969874
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121969874
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
121969874
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
DUF2981
Zn_ribbon_RanBP
eIF-4B
Motif
Other DBs
NCBI-GeneID:
121969874
NCBI-ProteinID:
XP_042376096
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Position
4A:44000772..44016142
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AA seq
657 aa
AA seq
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MCIQSVGTFCTNRTNSGGSMSKLEIASSEGGTWCCSICTYENSQRFIACELCGILRNSSV
KFEIDDQAVNRTSMNSEVSLMGRSLFYQSSNRMPKESVICASFLNNKAGEPLEKGQLSAL
IDLQNIFLSPCCNQTKHIEAFRFDTPSPDDLVSSGKSTRAFDKVDSMLSTSLKNIRTATR
KKGIVELLPDNQVPEILVASSLPNSHNDNVSGNPSSSRGGSPNSSREEKQKLANNLQILK
LEYSTTSGHEKTNSVSDYKPEDWMLSDKGRTINQLNLAIVGHVDCGKSTLSGRLLQLLGK
ISKKEMHRYERESKEKGKSSSAYAWALDASVEERERGVTMTVAVAYFSTKRYRVVLLDSP
GHKDFVPNMISGATQADAAVLVVDAAMGAFEAGMGGKITGQTKEHAQLIRSFGVEQIIVA
VNKMDLVDFSKDRFDYVKLQLGHFLRTCGFKESCVTWIPLSSLDNQNLLTTASDIRLSSW
YQGYCLLEAIDGLPPPQRDFSKPFLMPICDVIVKHSSAQVAACGKIETGAIRIGSKVIVM
PSGNLATVKNIERDSSPCNVARAGDNVAVSLHGVDAGHVIQGGVLCHPDFPVNIASNLEL
KVLILDIETPIIVGSQVELHVLHSKQAAKVVKLQSLLDPKTGHVIKNTPRFLVARQS
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgtgcatacagtcggttggaactttctgtaccaacagaacaaactctggagggagcatg
tcaaaactagaaattgcatcaagtgaaggtggtacttggtgttgttccatttgcacatat
gagaatagtcaacgttttattgcttgtgaactatgtggaattcttcggaattcctctgtg
aagtttgaaattgatgatcaagcagttaacagaacaagcatgaattctgaagtttctctc
atgggcagatcattattttatcaatcatctaataggatgcccaaggaatctgtcatctgt
gccagcttccttaacaataaagctggtgaaccgcttgagaaaggacaactttctgcactc
attgatctccagaacatatttttgtctccatgttgcaatcaaaccaaacatatagaagcc
ttcaggtttgatacaccatccccagatgatttagtttcttctgggaagagcacaagagct
tttgacaaggttgactcaatgctttcaacatctctgaagaatatacgaactgcgactagg
aaaaagggaatagtagaacttttacctgacaatcaagtgccagagattttggtggcatca
tctttgccaaactctcacaatgataatgtaagtggaaatcccagtagttcgagaggggga
agtcccaacagttcaagagaggaaaaacaaaagttagctaacaatctccaaatcttgaag
ttagagtactctacaactagtggacatgaaaaaaccaattcagtttctgactacaaacca
gaggattggatgctttctgacaaaggaagaaccataaaccagttaaaccttgcaattgta
ggtcatgttgattgtggaaaatccacattgagtggaagattgctacaacttttggggaaa
atttctaagaaagagatgcatagatatgagagagagtcaaaggaaaagggaaaaagttca
tctgcctatgcatgggcattagatgcaagtgttgaggagagggaaaggggcgtaacaatg
acagttgctgttgcatacttttcaacaaaaagataccgtgttgttttgctggattcacca
ggtcacaaagattttgttccaaacatgatatctggtgcaactcaagcagatgctgcagtt
ttggttgtagatgctgctatgggtgcatttgaagcaggtatgggtggcaaaattactgga
caaactaaggaacatgcacagcttattaggagctttggtgtcgagcaaataatagtagca
gtcaataagatggatcttgttgacttctccaaagatcggtttgactatgtaaagctgcaa
ttgggccatttcttacgtacttgtggattcaaggaatcatgtgtgacatggattcctcta
agttccctggacaatcaaaatttgctcacaactgcttctgacattcgcttgtcttcttgg
taccaaggatattgtcttctggaagccattgatggtttaccacctcctcagcgggatttt
tcaaagccatttcttatgcctatatgtgatgttattgttaaacattcatcagcacaagta
gctgcttgtgggaaaatagagactggagctattcgaattggttccaaggttatagtcatg
ccttcaggaaatctagctactgtaaaaaatatagagagggattcttctccttgcaatgta
gcaagagctggtgacaatgtggctgtcagtttacatggtgttgatgcaggacatgtgatc
caaggtggagttttatgccacccagatttccctgttaacattgcatctaacttagagctg
aaggttctcatcctcgacattgaaactccaattattgttggatctcaggttgagctccat
gtacttcactcgaagcaagctgcaaaggtggtaaaactacagtccctgttagatccaaaa
acaggacatgttataaagaacacaccacgtttcctcgtagccagacagagctag
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