Zingiber officinale (ginger): 121969904
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Entry
121969904 CDS
T08725
Name
(RefSeq) DNA polymerase lambda-like isoform X1
KO
K03512
DNA polymerase lambda [EC:
2.7.7.7
4.2.99.-]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03410
Base excision repair
zof03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
121969904
03450 Non-homologous end-joining
121969904
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zof03400
]
121969904
Enzymes [BR:
zof01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
121969904
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
121969904
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
121969904
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
DNA_pol_B_thumb
DNA_pol_lambd_f
HHH_8
BRCT
NTP_transf_2
HHH_5
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
121969904
NCBI-ProteinID:
XP_042376154
LinkDB
All DBs
Position
4A:complement(48288734..48385651)
Genome browser
AA seq
642 aa
AA seq
DB search
MYDLIDAIAASVVHPSCRTRVISPPAATDYEEDVAFVVASLIYYYYFWMSRKGGSKKPQH
SSPPDSDGMFQGMVVFLLPKGVQLRRLQVWRQKLTQMGAVVGDNLSKKVTHIFATNYDMF
LQQLSPEKLSQFKGCLLCYQWLENCLKLGEKIAEEPYVMTFERGGSAKRSCIISPEPSET
RHSDDESLSHKRCTVSFKKPKCGEGTSKKEKDLAEQGDSGKTKYEASGIHGVDGLLVGMG
ASHSSSFHNDTQSDFDTDDSGTPENKELMTKKIIVKDMSLIWGTDIRNDGAAGGADSDDD
ASHPQCPYDPPDLNKNITEIFGKLINIYRALGDERRSFSYYKAIPVIEKLPFRIESVDQV
KNLPTIGKSLQDHIHEILSTGKLSKLEHFENDEKVKTVSLFGEVWGIGPVTALKLYEKGH
HTLDDLKQDDSLSTAQKIGLKYFDDIKKRIPRHEVKDMEMLLQKAGQELLPGMIIVCGGS
YRRGKASCGDLDIVITHPDGESHEGFLLRYVQYLKDIKFLREDLVFSMNSTEGTDSGVDT
YFGLCTYPGRELRRRIDLKVYPRDRYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLY
LATQDSSGKRGTKSNTRVTCYTEKEVFDVLGFPWLEPHERNL
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgtacgatttgatcgacgccatagcagcttcggttgttcatccctcctgcagaacacgc
gtcatctctccgccggcggctaccgactatgaagaagacgttgctttcgtggttgcgagc
ttgatttattattattatttttggatgtcccgaaaaggaggctccaagaagccgcagcat
tcttctcctccagattccgatggcatgttccagggcatggtcgtcttcttgctccccaag
ggcgtccaactccgaaggcttcaggtatggaggcagaagctgacccaaatgggagctgtg
gttggtgataatctttctaagaaagtaacccatatctttgctaccaactatgacatgttt
ctacaacaattgagcccggaaaagttgtctcaatttaaaggatgtttactgtgctatcaa
tggttggagaactgtctaaaattaggagaaaaaatagctgaagagccatatgtgatgaca
tttgagagaggtggatcagcaaagcgctcttgcataatatctcctgaaccatctgaaaca
aggcattctgatgatgaatcactaagccacaaaagatgcacagtttcatttaagaagcca
aagtgtggggaaggaacaagcaaaaaagaaaaagatttggctgagcaaggagactcaggt
aaaacaaaatatgaagcgtcaggcattcatggagtggatggattattggtgggaatggga
gctagccacagtagtagcttccacaatgacacacaatctgactttgacactgatgattcc
ggaacaccagaaaataaggagcttatgacgaagaagataatagtgaaggacatgagtttg
atatgggggacggatattcggaacgacggagcagcaggaggagcagatagtgatgatgat
gcttctcatccgcaatgtccatatgatccacctgatctgaataagaacatcaccgaaatc
tttggaaagttgataaacatttatagagcactaggagatgaaagaagatcatttagctac
tacaaggccattcctgttattgagaaattacctttcagaattgaaagtgttgatcaggtg
aagaatcttcctacaatcgggaagtcattgcaagatcatattcatgaaatattgtctact
gggaaattatctaaattggagcattttgagaatgatgagaaggttaaaacagtgagtctc
tttggggaagtttggggtataggtcctgtgacagctcttaaattatatgaaaagggacat
catacacttgatgatctaaaacaagatgattccttgtcaactgcccagaagataggtttg
aagtattttgatgacatcaagaaaagaattccacggcatgaggttaaagatatggagatg
cttttacaaaaagctggtcaggaacttctgcctgggatgattattgtttgtggaggatca
tatagacgtgggaaagcatcttgtggcgacttagacattgtaattacacatcctgatggt
gaaagccatgaaggattcttacttaggtatgttcaatatttgaaggacatcaaatttttg
agagaagacttggtgtttagcatgaatagcactgagggaactgattcaggggttgataca
tattttggtctttgcacatatcctggcagagaattgcgacgtcgaattgatctgaaggta
tatccaagggatcgatatgcttttggattaattgcatggactgggaatgatgtactaaat
aggaggttgaggctgttagcagaatcaaaaggatatagactggatgacactggattgtac
ttggcaactcaggattcttctggaaaaagagggacgaaatccaacaccagggtaacttgt
tatacagaaaaggaagtttttgatgttcttggctttccttggctggaacctcatgagagg
aatctgtga
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