Zingiber officinale (ginger): 121969944
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Entry
121969944 CDS
T08725
Name
(RefSeq) small RNA degrading nuclease 5-like isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121969944
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zof03009
]
121969944
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
Pre-60S particles
RNases
121969944
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_T
MCM4_WHD
DUF2572
HEAT_2
Motif
Other DBs
NCBI-GeneID:
121969944
NCBI-ProteinID:
XP_042376206
LinkDB
All DBs
Position
4A:58685846..58729724
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AA seq
594 aa
AA seq
DB search
MGTCPKLTRPRTIKNPLFHPASRRHRERMDSAASSSKCSDCPKRQNDSGGGLAAQYFDVY
GPEGKADVIYKVPSDSTLTLQDIQGLVTWVIGDGLMPSWVFVKNKPLIRKVILLHIPGLD
AALYMSHTGLLSALKKYCGTPKPALALRCQFYLDELETIDALLTCKVKRKRGEVDPRPMP
PIKAIRQGNNFILANIKDLPFPIHYYTLSKKQLEENGYFLNLPGVITTLPSPSGSPLHEI
LALDCEMCVTTEGFELTRITLVDVEGEVVLDKLVKPFNNILDYNTRFSGITGEMLNGVTT
TLGDIQGDFLKLVNKETVLVGHSLENDLLALKISHELVIDTAILYKHRPGAYKTALRVLS
RKFLSREIQASGNGHDSIEDAKTAMDLALLKIRNGPDFGSPPQVTRRKLVSILHQNGKTC
SLIDDISILRKYSDESCNTIPVASDSESLSKAIKQVKNDKASFIWTRFTSLFSYFQKQAQ
DVERLQYRVAEVISSLTCKKKSARAAISYGSVSSELTDILSGINDKVQKLHNALPKNTLL
IISTGHGDTAIVQRLRKLLKEDNEKIINREEVVKALGELQAQAEVALCFSSVKH
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgggaacttgccccaaattaaccagaccccgaacaatcaaaaaccctctcttccacccg
gcttctcgtcgccatcgagaacgtatggattcggccgcttcctcttccaaatgctccgac
tgccctaagcgacagaacgacagtggtggcggcttggccgcccaatacttcgacgtctat
ggccctgaaggaaaagcagatgttatatataaagttccttcagattcaacattaactctt
caggatattcaaggacttgtaacttgggtcattggggatggtctcatgccatcttgggtt
tttgtaaaaaacaagccacttataaggaaagtcattcttctccacattccaggccttgat
gcagctttgtacatgtcacacactggcctactttctgccctaaagaaatattgtggtacg
cctaagccagcattagctttaagatgccaattttacttggatgagttggaaactattgat
gccctcctaacatgcaaagtgaaaagaaagcgcggggaagttgatccaaggcccatgcca
cccattaaagctattagacaagggaacaattttattctggcaaacataaaggatctgccc
tttcctatccactattatactctttctaaaaaacaacttgaggagaatggatatttctta
aatcttccaggtgttatcactacacttccatctccttcaggttctccattgcatgaaatt
cttgcacttgactgtgagatgtgtgtaacaactgaagggtttgaactcacaagaataaca
ttggtggatgttgaaggagaggtggtgcttgacaaactagttaaacctttcaacaatatc
ctggattataatactaggtttagtggaattactggtgagatgctaaatggtgtgacaaca
acacttggggatattcagggagacttcctgaagcttgtgaacaaagaaacggttcttgtt
ggccattctcttgagaatgaccttttagcattgaagatatctcatgaattggtaattgat
actgctattttgtacaagcaccggcctggtgcctacaagacagctctacgagttctatct
cggaaatttctttcgcgagagattcaggcttcaggaaatgggcatgatagtattgaggat
gcaaaaactgctatggatttggcacttctaaagattagaaatggacctgattttggctct
cccccacaagtcactcgtagaaaacttgtttctattttgcatcaaaatgggaaaacttgt
tctctcattgatgatatttctatacttaggaagtattccgatgaatcatgcaatacaatt
ccagtagcatcagattctgagtcactttctaaagctataaaacaggtcaagaatgataaa
gcaagctttatctggacccgctttacgagcttattctcttattttcagaagcaagctcag
gatgttgaaaggttacagtatcgagttgctgaggttatatcatccctgacatgtaaaaaa
aagtcagccagggcagccataagttatggttcagtaagctcagaattgactgacattcta
tctgggattaatgataaagtacaaaagctacacaatgcattgccgaaaaacacactgtta
attatttctactggccatggagatacagctattgtccaaagactaaggaaattgcttaaa
gaggataatgagaaaataatcaaccgggaagaagttgtgaaagccttgggagaactccaa
gcacaagctgaagtggcactttgtttttctagcgtcaaacattga
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