Zingiber officinale (ginger): 121970017
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Entry
121970017 CDS
T08725
Name
(RefSeq) protein CLP1 homolog isoform X1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121970017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121970017
Enzymes [BR:
zof01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
121970017
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
121970017
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
nSTAND3
AAA_22
ATP_bind_1
AAA_24
SRPRB
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
121970017
NCBI-ProteinID:
XP_042376336
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All DBs
Position
4A:complement(78671744..78708509)
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AA seq
381 aa
AA seq
DB search
MASSRQFKLAKESELRVEVGPDMPLRIRLLFGTAEIFGTELPPSNWLSISPCSKITVFTW
NGATIELDGVSEVEYVADETPMVSYVNAHAILDARRAQAKASHSNNVDSLQGPRVIVVGP
TDSGKSSLCKMLLSWACKQGWKPTYVDLDIGQGYITIPGCIAATPVEMPIDAVEGIPLEM
PIVYFYGHTSPTANGDLYKVFVKELARTLERQFSGNAEARAVGMVINTMGWVEGLGYELL
LNAIDTFNCDVVLVLGQEKLCSMLKEVLKTKPKVDVVKLHKSGGIVMRNQKVRQKARSLK
IREYFYGPINDLSPHSNIVNFSDISVYRIGGGPQAPCSALPIGAEPVADPTRLVAININR
DLLHLVLAISSAKEPDQIISR
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgtccagacaatttaaattagcgaaggagagtgagctcagagtcgaggttggc
cctgacatgccccttcgcattcgcctcctctttggcacagctgaaatattcggtactgag
ttgcctcctagcaattggctctccatctcaccatgcagcaaaatcacagtgttcacttgg
aacggcgccaccatcgagttggatggagtcagcgaagtggagtatgtggcagatgagaca
cccatggtgagctacgtgaatgctcatgccatacttgatgcaagaagagctcaagcaaag
gcatcacatagtaacaatgtggactctctgcagggtcctagggtgattgttgtgggaccc
acagattctgggaagagtagcttgtgcaaaatgcttctaagctgggcttgtaaacaagga
tggaaaccgacctatgtggatttggatattggtcagggctacataactattcctggctgc
atagctgctactccagttgagatgcctatagatgcagtggaaggaattcctctagaaatg
cctattgtgtatttttatgggcacacatctcctactgcaaatggtgatctttataaagtg
tttgtgaaggagttggctagaaccctagagaggcagttctctggaaatgctgaagctaga
gctgtaggcatggtgattaatactatgggatgggtggaaggccttggttatgagttactt
ctcaatgctattgatacatttaattgtgatgtggttctagtcttgggccaggaaaaactt
tgcagcatgcttaaagaagttttaaaaaccaagcctaaagtagatgttgtgaaactccat
aaatctggagggatagttatgaggaatcaaaaagtacgccaaaaggctaggagtttgaaa
atcagagaatacttctatgggcctataaatgatctctccccacattcaaatattgtcaac
tttagtgacatttctgtttatagaattggtggtggcccacaggctccttgttctgcactg
cctattggtgcggaacctgtagccgaccctactcgactagttgctattaacataaatcgt
gacttactccatcttgttctagctatttcatctgcaaaggagcctgatcagattatatcc
agataa
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