Zingiber officinale (ginger): 121970132
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Entry
121970132 CDS
T08725
Name
(RefSeq) F-box protein SKP2A-like
KO
K03875
F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121970132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
121970132
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
121970132
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Gene cluster
GFIT
Motif
Pfam:
DUF7885
LRR_6
LRR_At5g56370
LRR_4
F-box-like
LRR_NXF1-5
LRR_8
F-box
LRR_At1g61320_AtMIF1
zf_DPOE_2
LRR_RPS2
Motif
Other DBs
NCBI-GeneID:
121970132
NCBI-ProteinID:
XP_042376561
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Position
4A:89983849..89987756
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AA seq
370 aa
AA seq
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MGGGNPETVNLEVCFRSLMVAGGSQEKVERSMVVMQGWKDLPVELLLRILSLVGDDRTVV
VACGVCKGWRIALSLGLTNLSLAWCKNNMNNLVQSLIPKLPKLQVLSLRQNYSPQLEDND
VETISKHCHELRDLDLSKSQKLTDRSLYALGHGCPHLAKLNISGCSGFTDASLEYLARCF
KNLKYLNLCGCAKAASDRALHAISCNCNGLQSLNLGWCEGVSDKGVISLAAGCPDLQALD
LCGCILITDESVVALANGCPRLRSLGLYYCQNITDRAMYSLANSLVSSKHGPWKIKKGYQ
SGLMSLNISQCTALTPPAVQAVCNSFPELHTCPGRYSLLISGCLSLTSVHCACAAQDNRA
SRSAFPNHAY
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atgggaggcggcaatccagaaactgtgaatttggaggtttgcttcaggagccttatggtt
gccggcggcagccaagagaaggtggagaggtcaatggtggttatgcaaggttggaaggat
cttcctgtggagctactgcttcgaatcctctctctcgtgggtgatgatcgcactgtggtt
gtggcttgtggtgtttgcaaagggtggagaattgctctgagcctggggcttacaaatctc
tcgcttgcatggtgcaaaaataacatgaacaatcttgtgcaatcgcttatccctaagtta
ccaaagctgcaagttctatcgcttcggcaaaattacagtcctcaacttgaggacaatgat
gttgagactatatccaagcactgccatgaattaagggatttagaccttagcaaaagtcag
aaactaactgaccgttcattgtatgctttgggccatggatgtccccacttagcaaaactc
aacataagtggatgctcaggttttactgatgcttcccttgaatatctggcaagatgtttt
aaaaatttaaaatacttgaatctctgtggatgtgcaaaagctgcatctgaccgagctcta
catgctatttcatgcaattgcaatggcttacagtcattgaatcttggttggtgtgagggc
gtcagtgacaagggagttatcagtttggcagcaggttgccctgatctccaagctttggat
ctgtgtggttgtattctcatcaccgatgagagtgtggttgcattggcaaatggttgcccg
cgactaaggtccctcggcctgtactactgccaaaacatcaccgacagagccatgtactcg
ctagccaatagtctagtgagtagcaagcatggaccatggaaaatcaaaaaaggttaccag
agtgggctgatgagcctcaatatcagccagtgcactgccttaactccgcctgctgttcaa
gccgtctgcaactcatttccagagctgcatacttgtcctggcaggtattcgctccttatt
agtggctgccttagtcttacctctgtgcactgtgcctgtgctgcccaagataaccgtgcc
agtagatctgcatttccaaatcacgcttactga
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