Zingiber officinale (ginger): 121970166
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Entry
121970166 CDS
T08725
Name
(RefSeq) coatomer subunit beta'-1-like isoform X1
KO
K17302
coatomer subunit beta'
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zof04131
]
121970166
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
zof04147
]
121970166
Membrane trafficking [BR:
zof04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
121970166
Exosome [BR:
zof04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
121970166
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B-prop_COPA_B_2nd
TPR_COPA_B
WD40
WD40_Prp19
WD40_WDHD1_1st
WDR55
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_EIPR1
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_HPS5
Beta-prop_IFT122_1st
PEP5_VPS11_N
Beta-prop_DCAF4
Beta-prop_SPT8
WD40_like
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF12
WD_LRWD1
HEAT_GCN1
TPR_GEMI5
TPR_CcmH_CycH
TPR_1
Motif
Other DBs
NCBI-GeneID:
121970166
NCBI-ProteinID:
XP_042376614
LinkDB
All DBs
Position
4A:92485740..92498671
Genome browser
AA seq
904 aa
AA seq
DB search
MPLRLDIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVGIWNYQSQTMVKSFEVTELPV
RSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD
MLIKLWDWEKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTVKIWNLGSPDPNFT
LDAHSKGVNCVDYFTGGDRPYLITGSDDQTAKVWDYQTKSCIQTLEGHTHNVSAVCFHPE
LPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYMKGSRRVVIGYDEGTIMVKIG
REVPVASMEGSGKIIWAKHTEIQTVNIKTIGADYEVTDGERLPLAVKELGSCDLYPQSLK
HNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSDGEYAIRESTSRIKIFSKTFQ
ERKSIRPTFSAEHIYGGILLAMCSNDFICFYDWAECRLIRRIDVGVKNLYWADSGDLLVI
SSDTSFYILKYNRDVVSSYLENGKPADDDGVEEAFELLHEVNERVRTGIWVGDCFIYNNS
SWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVT
RGDLERAKGILPSIPKEHHNSVAHFLESRGMVEDALEVATDPNYRFDLALQLGQLEIAKE
IAIDVQSESKWKQLGELAMSTGKLEMAEECLSHAMDLSGLLLLYSAIGDAEGITKLASLA
KEQGKNNVAFLCLFMLGKLEGCLQLLVESNRIPEAALMARSYLPSKVSEIVSVWKKDLSK
VNSKAADSLADPEEYPNLFEHWQIALAVESNLAPNRGKYPPSEEYLSYVEKSNINLVEAF
RRMQVDEESTPLENGDYGHEVIQEDGVEEIPEEPVEVDVDDSTDSSVLVNGNEGEEQWVL
TPHQ
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atgcctctcagattagacatcaagaggaaacttgctcaaaggtcagaaagggtaaaatct
gtggatcttcatccaactgagccatggattcttgcgagtctttattctggaacagttggt
atctggaactatcagtcacagacaatggtaaaatcttttgaagtaactgaactaccagtg
agatctgcaaaatttgtagcacgcaaacagtgggtggtggctggtgcagatgatatgttt
atccgtgtctacaattacaacacaatggacaaagttaaagtatttgaggcgcatacagac
tacattaggtgtgtggctgtacatccaaccctgccatatgtgttgtcatcatcagacgac
atgttgataaagctttgggactgggagaagggttggatgtgtacccaaatttttgaagga
cactctcattatgtgatgcaagtgacctttaatccaaaggacaccaatacttttgcaagt
gcctcgttggaccgaacagtaaagatttggaatcttggttctcctgacccaaattttaca
ttagatgctcattccaaaggagtcaactgtgttgattattttactggaggcgataggcca
tatttgattactggttctgatgatcagactgccaaggtttgggactaccaaactaagagt
tgtatacaaacactcgaaggccatacccataacgtctctgctgtatgtttccatcctgag
cttccaattataataacaggttcagaggatggaactgttagaatttggcatgcaactacc
tatagacttgagaatacattaaactatggtctggaacgagtttgggctattggatacatg
aaaggatcaaggagagttgtaataggatatgatgaaggaaccattatggtgaagattggt
cgtgaagttccagttgccagcatggagggcagtggaaaaattatttgggcaaagcacact
gagattcaaacagttaatatcaagacaattggagcagactatgaggtcacagatggtgaa
agattgcctttagctgtcaaggaattgggaagctgtgatctgtacccacaaagcttgaag
cataacccaaatggaagatttgttgttgtctgtggagatggagaatacattatatatact
gcattggcatggagaaatagatcatttggatctgcattggaatttgtctggtcttctgat
ggagagtatgcaatcagggaaagtacatcaagaattaagatattcagtaaaaccttccag
gagagaaaaagcatacggccaaccttttctgctgagcatatttatggaggaatactatta
gcaatgtgctccaatgacttcatttgtttttatgattgggctgaatgtagattaatacgt
cggattgatgttggtgttaagaacctgtattgggctgatagtggtgatcttctagtcata
tcaagtgatacatcattctacatactgaaatacaatcgagatgttgtttcctcttaccta
gaaaatggtaagccggcagatgatgatggggtagaagaggcatttgagcttctgcatgaa
gtaaatgaacgtgttcgaactggtatatgggttggtgactgtttcatttataataattct
tcttggcgactaaattattgtgttggtggcgaggtcaccaccatgtttcatttggaccgc
cctatgtacttgctgggatatcttgctagtcaaagtcgggtgtatcttattgacaaggag
ttcaatgttatgggctataccttactcctcagtttgattgagtataaaactcttgttaca
cgtggggatctagaacgtgccaaaggaattttgccatcgattccaaaggaacatcacaat
agtgtggcacatttcttggaatcccggggaatggtagaggatgctcttgaggtagcaact
gatcctaattacagatttgatttagctcttcagcttggtcaattggaaattgcaaaggag
attgctattgatgtacaaagtgaatctaagtggaagcagttgggagagctggctatgtct
actggaaagttagagatggctgaggaatgcctatcacacgctatggatttgagtgggttg
ttgcttctttactcggccattggtgatgctgaagggataacaaaacttgcatctctcgca
aaagaacaaggaaaaaataatgttgcatttctttgtctattcatgctaggtaaactggaa
ggttgccttcagttattggtagagagtaatcgcattccagaagctgctctgatggcgagg
tcgtatcttccaagtaaagtatcagaaatagtatcagtttggaaaaaggatcttagtaag
gtcaattcaaaagctgctgattctttggctgatcctgaagagtaccctaatttatttgag
cattggcagattgctttggctgttgagtcaaatcttgctcctaacaggggtaagtatcct
ccatctgaggaatacttgagctatgtggaaaagtccaatattaatcttgtggaagctttt
agaagaatgcaagttgatgaagagagcacgcctcttgaaaacggtgactatggccatgag
gtgatacaggaggatggggtagaggagatcccagaggaacctgttgaagttgatgtagat
gattcgactgatagctcagtgcttgtcaatgggaatgagggtgaggaacagtgggtgcta
actccgcaccaatag
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