Zingiber officinale (ginger): 121970188
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Entry
121970188 CDS
T08725
Name
(RefSeq) small RNA degrading nuclease 1-like isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121970188
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zof03009
]
121970188
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
Pre-60S particles
RNases
121970188
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF641
Fungal_TACC
Motif
Other DBs
NCBI-GeneID:
121970188
NCBI-ProteinID:
XP_042376655
LinkDB
All DBs
Position
4A:complement(93711183..93742025)
Genome browser
AA seq
483 aa
AA seq
DB search
MGKAIAYADKEVIAEIVRLTQKQGLKGAKGGWKDFLYCHDGKFGSCLSDPTRRTRELLVD
FLQTFTKEEQKVFNKMIRRNNDHNAMKQFIKDCLHLESPKQRLVRLTMEHPKYTKHFCFP
FYDKEWVITHLGEIFEATKSETMLAVDCEMVLCQDGTEAVVKVCVVDQDLQVKLDQLVNP
MKAIADYRTNITGISSEDLEGVTCSLADIQKPLKKLLSHGTILVGHSLYNDLRALKVDHL
RVIDTLCIFKFAGLPTYAPSLNTLCKVVLGFPVRNDGESHNCLNDAQAAMKLVLAKLERG
YEDPIDSTDVEIPQYDLAKLLLHRIPLEVPSQELQRLFSREYDVTVESATRHRGESYSTY
AVFNNSIEADEAFNKINGYLTKDSYGRPQKCVFLNLSSGKKIQLCVRKMANGLDVSKRTH
DENADSMQQQSGDDTVTKKLKTCSYSCDYIKEIEKLRADLQQREEEIFNLQKALSEATRE
QHL
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaagcgattgcttacgccgacaaggaggttattgctgagattgtgagactaact
caaaaacaaggactgaaaggtgctaaaggaggatggaaggattttctatattgtcatgat
gggaaatttggttcttgtttaagtgacccaactaggaggacaagagagctcttggttgat
tttttgcagacatttacaaaagaagaacaaaaagtgttcaataaaatgataagaaggaac
aatgatcataatgcaatgaagcagttcatcaaggattgtttacatcttgagtcacctaaa
cagaggttggtccgtttgacaatggaacatccaaaatacacaaaacacttctgtttccca
ttctatgataaggagtgggtaattactcacctaggtgaaatttttgaagcaacgaaatca
gaaactatgcttgcggttgattgtgagatggtcctttgccaggatggtactgaagcagtg
gtgaaagtatgtgtggtagatcaagatttgcaggtcaaacttgatcagcttgtaaatccc
atgaaggctattgctgattacagaaccaacattactgggatatcttcagaggatttggaa
ggagtaacttgctccttagccgatatacagaaacctttgaagaaacttttatcacacgga
actatcctagtgggccatagcttgtataatgatttacgagccctgaaagtggatcacctt
agagtcattgacaccttgtgcatcttcaagtttgcaggtttacctacctatgcaccttcc
ttgaacacattgtgcaaggtagtgttgggttttccagttcgtaatgatggggaatcacat
aattgtcttaatgatgcacaagctgctatgaaactagttcttgctaagcttgaacgtgga
tatgaggatccaattgatagcacagatgtggaaatacctcagtatgacttggcaaaacta
ctgctacacagaataccacttgaagtaccttctcaagagttacagaggctgttttctcga
gaatatgacgtcacagttgagtctgctacgaggcatcgaggtgaaagttattcgacatat
gctgtcttcaataattctatagaggcagatgaggcattcaacaaaattaatggctattta
actaaggattcttatggtcgaccccagaaatgcgtctttttgaatcttagtagtggaaaa
aaaattcagttgtgtgtccgcaagatggccaatggcctagatgtgtcaaagaggacacac
gatgagaatgctgattccatgcagcaacaatcaggagatgacactgtcacaaaaaagtta
aaaacttgttcatattcctgtgactatattaaggagattgagaaattgagagcagatttg
caacaaagggaagaggaaatatttaatttgcaaaaggctctctccgaagctaccagagag
caacatttgtga
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