Zingiber officinale (ginger): 121970236
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Entry
121970236 CDS
T08725
Name
(RefSeq) DNA mismatch repair protein MLH1-like
KO
K08734
DNA mismatch repair protein MLH1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03430
Mismatch repair
zof03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
121970236
03460 Fanconi anemia pathway
121970236
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zof03400
]
121970236
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
121970236
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Mlh1_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
121970236
NCBI-ProteinID:
XP_042376737
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Position
4A:complement(95147994..95169751)
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AA seq
737 aa
AA seq
DB search
MEIDESSSAAATIDEPQEEASAAQPPRIYRLDESVVNRIAAGEVIQRPVSAVKELVENSL
DAGSTSISVTVKDGGLKLIQVSDNGHGIRYEDLPILCERHTTSKLSTYEDLQTIKSMGFR
GEALASMTYVGHVTVTTITEGQLHGYRVSYRDGVMEHVPKPCAAVKGTQIMVENLFYNIV
ARRKTLQNSSDDYAKIVDLISRFAIHNTLVCFSCRKHGANRADVQSVTTSSKLDAIKTVY
GISVARELMEISASDDNPDQSIFKMTGFISNANYIAKKTTMVLFINDRLVECSALKRAIE
VVYSATLPKAAKPFIYMSIELPSEHVDVNIHPTKREVSLLNQESLIETIQSAIESKLMNC
NNTRTFQTQAVSSAPESSFSIRKDIQKNPSSSGGKFQKTPINRVVRTDSRDPSGRLHAYW
SNGPPSQHQKKSDLASVRIAVRQRRNPRESADLTSIQELLNDVDQNIHSGLLDIVKDCTY
IGLADDVLAVLQYSTHLYLVNVVNASKELMYQQAIRRFAHFSAIQLSEPAPIPELLIMAL
KDEDLKSTDDNDMDLKNTIAEMNTELLKQKAEMLEEYFCINIDQEGNLMRLPVLLEQHTP
DMDHVPEFLLSLANDVDWENEKECLQTICAVLGNFYAMHPPVLPNPAGDGIQFYKKNPKS
IDDTGDDLKDENPEKDDLDQELLAEAETAWAQREWNIQHVLFPSMRLFLKPPRSMATDGT
FVQVASLEKLYKIFERC
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atggagatcgacgagtccagtagtgcagcggcgacgatagatgagccccaggaggaggcg
agcgcggcgcagcctccacggatctacaggcttgacgagtcagtagtgaaccgtatcgcg
gcgggggaggttatccagcggcctgtctcggccgtgaaggagctcgtcgagaatagcctc
gacgctggctccacctccatctcagttaccgtcaaggacggtggtctcaagctcattcaa
gtctccgacaacggtcacggaatcaggtatgaagatctgcctatactatgtgaaaggcac
accacatcaaaattgtctacttatgaggacctgcagacaattaaatcaatgggttttaga
ggagaggctttggccagcatgacttatgttggtcatgtgacagttacaactataactgaa
ggccagttgcatggttatagggtttcttatagagacggagtaatggaacatgtacccaaa
ccttgtgctgctgtaaaggggactcaaataatggttgaaaacctattttacaacattgtt
gctcgtagaaaaacattgcagaattccagcgacgattatgcaaagattgtagatctcatt
agtcggtttgcaattcataacacattggtgtgcttttcctgcagaaagcatggtgcaaat
agagcagatgttcaaagtgttactacttcttccaagcttgatgctatcaaaacagtatat
ggtatttctgttgctcgtgaattgatggagataagtgcttcagatgataatcctgatcaa
tcaatatttaagatgacaggctttatttctaatgcaaattacattgcaaagaaaacgacg
atggttcttttcataaatgacaggctggttgaatgctctgccttgaagagagctatagaa
gttgtgtactctgcaacactgcccaaggcagctaaaccttttatttatatgtcaattgaa
cttccatctgaacatgtagacgtgaatatccatcccactaaaagagaggtgagccttttg
aatcaagaaagtcttattgaaacaatacagagtgctattgagtctaaattgatgaactgt
aacaatacaaggacatttcaaactcaggctgtaagttctgcaccagaaagtagtttctct
atcagaaaggacattcagaagaatccttcctcttctggaggaaaattccagaaaacgcca
ataaatcgagtggttagaacagattctcgtgatccttctggaaggttacatgcttattgg
tcaaatggtcctccttcacaacatcaaaagaagtcagatttggcttctgttagaattgct
gtgagacaaaggaggaaccccagggaatctgcagaccttaccagcatccaagagcttcta
aatgacgttgatcagaatattcattcaggactcttggatattgtaaaagattgcacatat
attgggcttgctgatgatgttcttgcagtacttcagtatagtactcatttgtaccttgta
aatgtggtaaatgcaagcaaagaacttatgtatcagcaagccatacgccggtttgcccat
tttagtgccattcaactcagtgagcctgcaccaataccagagttactaataatggcgtta
aaagatgaagatttaaaatctacagatgacaatgatatggatttgaaaaatacaatagca
gagatgaatactgagttactcaaacaaaaggcagaaatgctcgaagagtatttctgcata
aacatagatcaagaaggaaacttgatgaggcttcctgttttactcgagcagcacactcct
gacatggaccatgttccagaattcttgctgagtttggctaatgatgttgattgggagaat
gagaaagaatgtctccagacaatctgtgctgttcttggtaatttctatgccatgcatcct
cctgtcctccccaatcctgcaggtgatgggatccaattctacaagaaaaatcccaagtca
attgacgatactggtgatgacttaaaggatgagaatcctgaaaaagatgatctggatcaa
gagctacttgctgaggcagaaaccgcctgggctcaacgggagtggaacattcaacatgta
ttattcccatcaatgaggctttttctcaaaccaccaagatctatggcaacggatggaact
tttgtccaggtcgcttctttggagaagctctacaaaatcttcgaaaggtgttag
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