KEGG   Zingiber officinale (ginger): 121970263
Entry
121970263         CDS       T08725                                 
Name
(RefSeq) cyclin-dependent kinase D-1-like
  KO
K02202  cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03022  Basal transcription factors
zof03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    121970263
  09124 Replication and repair
   03420 Nucleotide excision repair
    121970263
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01001 Protein kinases [BR:zof01001]
    121970263
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:zof03021]
    121970263
   03019 Messenger RNA biogenesis [BR:zof03019]
    121970263
   03400 DNA repair and recombination proteins [BR:zof03400]
    121970263
Enzymes [BR:zof01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.11  Protein-serine/threonine kinases
    2.7.11.22  cyclin-dependent kinase
     121970263
    2.7.11.23  [RNA-polymerase]-subunit kinase
     121970263
Protein kinases [BR:zof01001]
 Serine/threonine kinases: CMGC group
  CDK family
   121970263
Transcription machinery [BR:zof03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     121970263
Messenger RNA biogenesis [BR:zof03019]
 Eukaryotic type
  mRNA processing factors
   5' end processing
    Capping factors
     121970263
DNA repair and recombination proteins [BR:zof03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     121970263
SSDB
Motif
Pfam: Pkinase PK_Tyr_Ser-Thr ABC1 RIO1 DUF3984 Haspin_kinase Beta-prop_TEP1_2nd
Other DBs
NCBI-GeneID: 121970263
NCBI-ProteinID: XP_042376792
LinkDB
Position
4A:complement(96410248..96446562)
AA seq 452 aa
MQRTSVLNTETASTSNTMLQAPDAGGASPCEEDAALSKRVADRYLKREVLGEGTYGVVFK
AIDTKTGQTVAIKKIRLGKYKEGVNFTALREIKLLKEIKDPNIIELIDAFPHKGNLHLVF
EFMESDLEAVIRDRNIVLSPADIKSYLQMILKGLACCHRKWVVHRDMKPNNLLIASDGQL
KLADFGLARTFGSPDRRLTHQVFARWYRAPELLYGAKQYGSGVDVWAAGCIFAELLLRRP
FMQGTSDIDQLGKIFAAFGTPKPSQWADMVYLPDYVEYQYVPAPPLRTLFPMASDDALDL
LAKMFTYDPKARITAQQALEHRYFASVPAPTRPSLLPRPPPKGDSQTHKTSEFNSQDGPI
VLSPQRKMRRITVNHDGLEGTVYQLDKASEHAKEARHMDGISGQSESMPMSIDAGVLFGS
RQPPRPTLNSADRTHLKRKLDLEPEFNYNERE
NT seq 1359 nt   +upstreamnt  +downstreamnt
atgcagaggacttccgtgctcaacacggagacggcatcgacgtcgaatacgatgcttcag
gccccggatgccggtggggcctccccctgcgaggaggatgccgcactctcgaagcgcgtc
gctgaccgctacctcaagcgcgaggtgctaggggaaggcacatacggggtggtcttcaag
gccatcgataccaagactggtcaaacagttgcaattaagaagattcgtctaggaaagtat
aaggaaggtgtaaacttcactgcacttagggagattaaattgcttaaagagattaaagat
cctaatatcattgagttaattgatgctttccctcacaagggtaacttgcaccttgtattt
gagttcatggagagcgacttggaagctgttatccgtgatagaaacattgtcctgtctcca
gctgacataaaatcatatcttcagatgatactaaaaggacttgcctgctgccatagaaaa
tgggtcgtgcacagggatatgaaacccaacaacctacttattgcttctgatggacagctt
aaacttgcagactttggtctagcacgcacttttggaagtccagaccgcaggctcactcac
caggtttttgctcgttggtatagagcacctgagctgttgtatggggccaaacaatatgga
tcaggggtagatgtgtgggctgcaggttgtatatttgctgaactgctccttaggcgacct
ttcatgcagggaacaagtgatattgatcagcttggaaagatatttgcagcttttgggact
ccaaagccatctcaatgggcagatatggtttatcttccagattatgtcgaataccagtac
gtccctgcaccaccattgaggacactttttcccatggctagtgatgatgccttggatttg
ttggcaaagatgttcacttatgatccaaaggcaagaataacagcacaacaggcgttggag
cacaggtactttgcatcagtacctgcgcccacaaggccatctttgcttccaaggcctccc
ccaaagggagattcacaaactcacaagacttcagagttcaattcgcaggatggccccatt
gtcttatctccccaacggaagatgaggaggatcactgtcaatcacgatggattggagggg
actgtataccagctagataaggctagcgaacatgctaaggaagctagacatatggacgga
atcagtggtcagagtgaaagtatgcccatgtcgatagatgcaggagttctttttggttct
cgccaacctcccaggcccactttgaacagtgctgataggacacatttaaagagaaaacta
gatctggaacctgaattcaattacaatgagcgggagtag

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