Zingiber officinale (ginger): 121970559
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Entry
121970559 CDS
T08725
Name
(RefSeq) WD-40 repeat-containing protein MSI4-like
KO
K10752
histone-binding protein RBBP4
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03082
ATP-dependent chromatin remodeling
zof03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121970559
03083 Polycomb repressive complex
121970559
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
zof03036
]
121970559
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
121970559
Histone modification proteins
HAT complexes
HATB complex
121970559
HDAC complexes
Sin3A-HDAC complex
121970559
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
121970559
PRC2.2
121970559
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
121970559
Heterochromatin formation proteins
Other heterochromatin formation proteins
121970559
Chromatin remodeling factors
NuRD complex
121970559
NuRF complex
121970559
NuRF complex (fruit fly)
121970559
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_EML
EIF3I
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_DCAF12
Beta-prop_WDR90_POC16_2nd
eIF2A
WD40_RFWD3
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_WDR35_TULP_N
Beta-prop_SPT8
Beta-prop_IFT140_1st
Beta-prop_IP5PC_F
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
121970559
NCBI-ProteinID:
XP_042377283
LinkDB
All DBs
Position
4A:complement(110053214..110067778)
Genome browser
AA seq
462 aa
AA seq
DB search
MKERDGKATVDERYTQWKSLVPVLYDWFANHNLVWPSLSCRWGPQLEQATYKNRQRLYLS
EQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELP
QNSKIVATHTDSPDVLIWDVETQPNRHPMLGAAESRPDLVLTGHQQNAEFALAMCPTEPF
VLSGGKDKSVVLWSIQDHISSLAESSSKSPVSSTPNSGGKSSIKSGEKNPESLGPRGVYQ
GHGDTVEDVQFCPSSAQEFCSVGDDSCLILWDARVGTSPVVKVEKAHDADLHCVDWNPHD
QNLILTGSADNSVRMFDRRNLTSGGVGSPIHKFEGHKAAVLCVQWSPDRASVFGSAAEDG
FLNIWDYEKIGKQKEHTGVKTPNSPPGLFFQHAGHRDKVVDFHWNASDPWTIVSVSDDCG
STGGGGTLQIWRMSDLIYRPEDDVLAELEKFKTHILTCSPKA
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagcgagacgggaaggcgacggtggacgagaggtacacgcagtggaagtccctc
gtccccgtcctctacgattggttcgccaaccacaaccttgtctggccctccctctcatgc
cgatgggggcctcaactcgaacaagcaacctacaagaatcgccaacgcctttacctctct
gaacagactgatggttctgtaccaaatactcttgtcatagcaaattgtgaggttgtcaag
ccaagggtagctgctgctgagcatatctcccagttcaatgaggaagcccgttccccgttt
gtgaagaaatacaaaacaattatacatccaggggaggtaaacagaattagagagcttcct
cagaacagcaaaatagttgctacacatactgacagccctgacgttctaatttgggatgtt
gaaacgcaaccaaatcgccatcccatgttaggagctgctgaatctcgtccagatttggta
ttgacaggacatcaacaaaatgcggaatttgccctggctatgtgtcccaccgaaccattt
gtgctttctggagggaaggacaaatcagtggtcttgtggagcatacaggaccacatttct
tctcttgcagaatcatcttccaaatcgcctgtctcgtcgacaccaaattctggtggtaag
tcatccattaaatctggtgagaaaaacccagaaagtcttggaccaagaggtgtgtaccaa
ggtcatggagatactgttgaagatgtccagttctgtccatctagtgcacaggaattctgt
agtgtaggcgatgattcttgcctcattctatgggatgctcgagttggtactagtccagtt
gtcaaggttgagaaagctcatgatgcagatcttcattgtgtggattggaatccccatgat
cagaatcttattttgactggatctgctgataattcagttcgaatgtttgatcgccgtaac
cttacatctggaggtgttgggtcacccatccacaaatttgaaggtcacaaagctgctgtt
ctttgtgttcagtggtctcctgatagagcatcagtttttggaagtgctgcagaagatggc
tttctcaatatctgggactatgagaagattggtaagcagaaagaacatactggagtaaaa
acacccaactcacctccgggtttattctttcaacacgcggggcatagagataaagtggtg
gattttcattggaatgcatctgatccatggactattgttagtgtttctgatgactgcgga
agtactggcgggggtggtacattgcagatttggcgtatgagtgatttgatatacaggcca
gaagatgatgttttggcagagctggagaaattcaaaacccacatactgacatgctcacca
aaggcctag
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