Zingiber officinale (ginger): 121970563
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Entry
121970563 CDS
T08725
Name
(RefSeq) uncharacterized protein LOC121970563 isoform X1
KO
K24155
rabconnectin-3a
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
121970563
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zof04131
]
121970563
Membrane trafficking [BR:
zof04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
121970563
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
121970563
RAVE complex
121970563
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
Beta-prop_THOC3
WD40_Prp19
Beta-prop_WDR3_1st
WD40_WDHD1_1st
Beta-prop_EML
Beta-prop_WDR5
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WDR55
Beta-prop_EML_2
Beta-prop_IFT140_1st
Beta-prop_WDR36-Utp21_1st
EIF3I
Beta-prop_TEP1_C
Motif
Other DBs
NCBI-GeneID:
121970563
NCBI-ProteinID:
XP_042377288
LinkDB
All DBs
Position
4A:complement(110218709..110239803)
Genome browser
AA seq
2503 aa
AA seq
DB search
MPEEVGGSSTTSRGAGLAGSEDIMDLLPLELVRSQVIPPAPNRRESSIDWLPEFGGASWI
AYGASSLLVISHFPSPFSCNEPQPGPFFRQVIEPPTGNRNAELTAVSWCPVQPSEGEIAV
ALENNIFMYSPVTSSAPGSFSWRQTVVIVETFPIEIIGWTGSGDGLVAAGTEVVLWIRKS
NLWEMAWKVRTEVPQTHVSASWFSDGLVATAARGLVHHYEVTAKESNYTLSQSAKHVTVY
FRDGKSGTTTVQLYHPQPIVMIQWRPYIGVQSQADPSSVYNILLTGCLDGTVRLWSEIDN
GRPRKFNKEIHDQKSMKRLFHVVAVIEMNQSLKGILGTNIFVKWAIDSSCVIFKGESGGY
SLLPTYTEHQQIGKCDWLIGIGPDFSVTFWAVHCLYDVSPPRFPRVTMWKKGNLMDFKDS
KYPYFGSPNIKNQAILVKVVASRSWLCGPPIACSLLQLLPDNSFSWSELYSPSEKMEDTS
LRQIDKERSLSYIAHTALSELGHTGCIIQVAVHPCSFDILLAVSLDSNALLLFWSLSTLS
ESILPSHTYIHPMWKLLDHVSLKALSPDHEYSCLVWGPAVLNENQFLLVGHEDGIDCFMI
EVSCKEESISAHKVLTVPFNGYNDRGNPPDQIFAIPLISNPRHSSNSSSFLLVSVWRENY
NPLSWTIDLHMSINDGVSSNDNDLAISKGQCVSSSGKCCYATFYKHSFESSPHCWDGVTT
ISVASPTSCPLPFEQVYSNDSPSNYCGYHMATGYSGGTVKLWRICHMQQDHSDSENVPWE
LAGTFTAHEGPVNFLSLSSCSSKVATASIDGRNSTTSLHIWEFVKLTHGGSFVLEDAIDL
NGILIAVRWLALGNGQMLLGICLPNEFRVYSQRRSSTHSFAYSDMSKEMHTWYCIAVSGS
STIVRDFLWGPKLTAVIVHEKHFSICSQWLLRTNNTYNVENSVAYVGRIEESLLCVTNTG
KNMFDTDEQLEYGYSKKISLQDNVPNTENKLFYILDVSQKLGGSLALYDPEALIQYIYSG
NWKYALVILKNFVECICSYKTSTTIPESNKQSLLSCKMLEVHLARYIEDNNSKNSSSEKL
FWGQNITTSGPNFHLGGNELQFPNTHLETNTFERIPDNSNKSEITELIDTLEKSNQVSSL
TDLMKTQILVILELLNEISNTKATAAYGSLDDAGRRFWVSVRFQYLYSMRRSGGVVAEDL
PVNSRLAAWAFQSDCQDDLLNSVLSSDPSWVDMRNLGVGLWYTNASQLRTRMEKLARSEY
LRNKNPKDCALWYLALNRLQVLISLFKISKDEKDKVLFGFLSRNFQDEKNKAAALKNAYV
LMGKHELKLAIAFFLLGGDSSSAVSVCAKNLGDDQLALVICRLLEGYGGSLEKQLISNIL
LPKALEKGDYWLSSLLEWTLGNYSQSVKTLVNGQTKQVNRNSAALCNYGALSDPDIGRYC
VILASRNTFRCSVGEDVAADLSKFASFLAASALNRCGVPLEALSCLSYSLSSDGKDQKNV
STAGPHDIFHQILSPFTGDGCNWVLDNVSHQLEVNTKTNIALYYIDSFLRNHRVWSSHSL
SKSREVISCHYVYLQEEDLSQMKQDLQMLLSMIERKFLLKSVDIFNLVLLSAHNYGSLFL
GYLMLHVEEFTRNEYKNWSADLIFVPAFVRLLIKSTVEILCFLARFVVSFNFTESMLKPL
HDNHYQIHTILFCLKNMLCFIRTFGSSSNYYQGEKASEDFSTFFPFALDLLEFYVDFAFA
CIEGNFKGLFMMINHILIALANDESSIEVLSDELRKFLCQNSQLVTHCASVVEVESISNS
NFKQKHLETGDFPIADDEKWKLLWISLWLHMLNFAKHGLGKISIKEGSHNGSSINNIITV
FISAITKSLVSTVAYISSSLVKLVASFLRQKALKGLPIPSILWLDEIARSHPTSLHYHLN
QRLDSLQLSDNKTQVSLKMLWDISICPVDICEHFAKEKVTCFPYYHGNQFDTWKDVQRNI
FSDNENDHINDKQEKLDSGSSYKETISEHGGNTMDNNGFVETGRKHSGPRTDISYFHNPR
EITRRSGELFEAICFNSINEHEIAIASNKKGLIFFNLKYEEYSRKQADYIWSDCDWPKDG
WAGCESTPVPTYISQGIGLGSKRGVHLGLGGATIGMGSLARPRRDLTGGGAFGIPGYAGI
GAAGLGWGEEEFEEFRDPPATVENIHSRALARHPLLPFLLVGSSNTHVYLWEFGKQSATA
TYGVLPAANVPPPYALASISALQFDHYGHRFATAALDGTICTWQLEVGGRSNVHPTDSSL
CFDNHASDVAYVATSGSILAVAGSSTNGINVVLWDTLAPPATSQASLFCHEGGARSISVF
DHVIGTGSISPIIVTGGRSGDVGLHDLRYIATGKTRRNRHASEQDLKTMHATNSGISKYA
ENSNGMMWYIPKAHLASVTRIATIPNTSLFLTGSKDGDVKLWDAKRSQLVFQWQKLHERH
TFLQPNSRGFGGVVRAAVTDIQVLSRGFLTCGGDGSTKLIQLK
NT seq
7512 nt
NT seq
+upstream
nt +downstream
nt
atgccggaggaggtgggcggcagtagcacgaccagccgcggtgccggcctcgccggatcg
gaggacatcatggatcttctgcctctcgagctcgtacgatcccaagtcatccctcctgct
ccaaaccgccgcgagtcctccatcgattggctgccggagttcgggggcgcatcgtggatc
gcctacggagcgtcctcgcttctcgttatctcccacttcccttcgccattttcctgcaac
gaacctcagccaggccctttcttccggcaggtcattgaaccgccaactgggaataggaac
gccgagttgacggccgtctcttggtgcccggtccagccgtcggagggagagattgcggtg
gcgttggagaataacatcttcatgtactcgccagtaacttctagcgcaccaggctctttt
tcttggaggcagactgtggtcatcgtggagacttttccaatagagattattgggtggacg
gggtctggagatggactagttgctgctggcactgaagtagttttgtggataaggaagagc
aatctttgggaaatggcttggaaggtgagaacagaagtacctcaaactcatgtttctgca
tcctggttttcagatggccttgtggctacagctgctcgaggattggtgcatcattatgaa
gttacagccaaggaatcaaactataccttgtcacagtcagcaaagcatgttactgtatat
tttcgtgatggtaagtctggaactacaacagttcaactctatcatcctcaacctattgta
atgattcagtggagaccgtacattggtgtgcaatcacaagcagatccttccagtgtatac
aacattttgctgacaggctgcttagatggaaccgtgagactatggagtgagattgacaat
ggtaggcctagaaaattcaataaagagattcatgatcaaaaatccatgaagcggttgttc
catgtggttgcagtgattgaaatgaaccagtctctgaagggaatacttggcacaaacata
tttgtaaaatgggcaatagattctagctgtgtgatcttcaagggtgagagtggtggttat
tctttgttaccaacatacactgaacaccaacaaattggtaaatgcgattggttaattggt
ataggacctgacttttctgttactttttgggctgttcactgcctctatgatgtgtcacct
ccacggtttccacgggtgacaatgtggaagaaaggaaatctgatggatttcaaagactcc
aagtatccctattttggttctccaaatataaaaaaccaagctatccttgtaaaagttgtt
gcctcaagaagttggctttgtggaccacctatagcttgctctttgcttcaattattgcct
gataactcattcagctggtcagaattgtatagcccatcagaaaaaatggaggatacttct
ttgagacagatagataaggagaggagtctttcatacatagctcatacagctctaagtgag
cttgggcatactggatgcatcatacaagttgctgtgcatccatgtagttttgatatatta
cttgctgtttcattggattccaatgcattacttcttttttggtccttgtctactctttca
gagagcatcttgccttctcatacatatattcatccaatgtggaaacttttggatcatgtt
tctttaaaagccttatcaccagatcatgaatattcatgcttggtttggggacctgctgtt
ttgaatgagaatcagtttcttcttgtgggacatgaagatgggattgattgtttcatgatt
gaagtttcttgtaaagaagaaagcatatcagctcataaagttcttaccgtccccttcaat
ggttataatgacagaggaaacccaccagatcagatatttgcaatacccttgatttccaac
ccacggcattcatctaattctagtagttttctactggtctctgtatggagggaaaattat
aatccattatcatggacaattgaccttcacatgtcaatcaatgatggggtctcatccaat
gacaatgatttggctatttcaaaaggtcaatgcgtgagttcttctggtaaatgttgctat
gctaccttttacaaacattcatttgagtcctctcctcattgttgggatggagttacaact
atttctgtagcatcgccaactagttgtccattaccctttgaacaagtatattctaatgat
tctccttccaattattgtggctaccatatggccacaggatactctggtggcactgtaaaa
ttatggaggatctgccatatgcaacaagatcattctgattcagaaaatgtcccttgggag
ttagctggtacttttactgcccatgaaggcccagtcaattttctttctttatctagttgc
agcagtaaagttgctaccgccagcattgatgggcgcaacagtactaccagccttcatatc
tgggaatttgtaaagctaacacatggtggatcatttgtattagaagatgcaatagattta
aatgggattcttattgctgtaagatggttagcattaggaaatggccagatgctgcttgga
atctgtctaccaaatgaatttcgtgtatattcgcaaagaagatcgtcaactcactccttt
gcttattcagatatgtcaaaggagatgcacacatggtattgcattgcagtctcaggttct
tcaaccattgtaagggattttctttgggggcctaagttgaccgctgtgattgttcatgag
aagcatttttctatttgcagtcagtggctactgagaacaaataacacatataatgttgag
aattctgttgcttatgttggcaggatagaggaaagcttgctttgtgtaactaatactggt
aaaaacatgtttgatacagatgagcaattggaatatggttactcaaagaagatttctcta
caggacaatgttcccaatactgaaaataaattattttatattctagatgtatcccagaaa
ttgggtggatctctagcactttatgatcctgaagctttgattcaatacatttattcaggt
aactggaaatatgcactagttatcttgaagaactttgttgaatgtatttgcagttataaa
acttccactacaattcctgaaagcaataaacaaagcctactttcttgcaagatgctggaa
gttcatttggctagatacattgaggataacaattctaaaaattcgtcctctgaaaaatta
ttttggggtcagaatattactacaagtggacctaattttcatcttggagggaatgaactc
cagtttccgaacactcacttagagaccaacacttttgagagaattccagacaactctaac
aaatctgagatcacagaactaattgacacccttgagaaatctaatcaagtttctagttta
acagatttgatgaaaacccaaattctagtgattctagaacttttgaatgaaattagcaat
acaaaagccactgcagcctatggcagtcttgatgacgctgggcgaaggttctgggtttct
gttagatttcaatatctatattcaatgagaaggtctgggggagttgtagctgaagatctt
cctgtcaactctaggttggctgcttgggccttccaatctgattgtcaagatgatctgctt
aactctgttttatcttcagacccatcttgggtagacatgagaaatttgggtgtaggtcta
tggtatacaaatgcatcgcaattgagaacacggatggagaagttggctagatccgagtat
ctaaggaacaagaaccccaaggactgtgcactatggtatttagctcttaacaggcttcaa
gttttaatcagtctttttaaaattagcaaagatgagaaagataaagtattgtttggattt
ctgtcacgtaatttccaggacgagaagaacaaagctgctgctctgaagaatgcttatgtt
ttaatgggaaaacatgagctaaagcttgcaatagcattttttctgcttggaggagattct
tcctctgctgttagtgtttgtgctaagaaccttggagatgaccaactagctctggtaatt
tgtcggcttctagaaggttatggaggttcattagaaaaacaactcatatcaaacattttg
cttccaaaggcattagagaaaggggactactggctttccagcttacttgaatggacattg
gggaattactcgcaatcagtcaagacactagttaatggtcaaacaaaacaagttaacaga
aactcagctgctttgtgcaattatggtgccttgtcagatccagatatcggtcgctactgt
gttatacttgcctcccgaaatacttttagatgctctgttggtgaagatgttgcagcagac
ctttctaaatttgcatcatttttggctgcaagtgccttgaacagatgtggagtccctctt
gaagcactttcatgcttatcctattctttaagcagcgatggcaaggaccaaaagaatgtg
tcaactgctggacctcatgacatatttcatcaaatactgagtccgttcaccggcgatggt
tgcaactgggtgcttgacaatgtatctcatcaattggaggtgaatactaaaacaaatata
gcactgtattacatagacagcttcttgaggaatcatcgagtatggtcatcccatagccta
tcaaaatccagagaagtgataagctgtcactatgtttatcttcaagaagaagaccttagc
caaatgaagcaggatcttcagatgttattatcaatgattgaaaggaaattcttgctgaag
tcggttgacatatttaacctggtattactttctgctcacaactatggatcattatttctt
ggctatctgatgttacatgtggaggagtttacacgaaatgaatacaaaaactggagtgct
gatttgatctttgtccctgcttttgtcaggcttctcattaagtccacagtggagatctta
tgttttctagctaggtttgtggtgtctttcaatttcactgagtcaatgctgaagccactt
catgacaatcactatcagatacacaccattctattttgtttgaagaacatgctgtgcttc
atcagaacttttggttcatcttcaaactattatcagggagagaaagcttcagaagatttc
agtacttttttcccttttgctcttgatcttcttgaattttatgtagactttgcttttgct
tgcattgaaggaaattttaaagggctttttatgatgatcaatcatattttaattgcattg
gcaaatgatgaatcttctattgaagtgctatcagatgaattgaggaagtttttatgtcag
aattcacagttagtgactcactgtgcgtcagttgttgaggttgaaagcatctctaactca
aacttcaaacaaaagcatttggaaacaggagactttcccattgcagatgatgaaaaatgg
aaattattatggatttctttatggttgcacatgctaaactttgcaaaacatgggctaggc
aagatttcaataaaagaaggctctcacaacggaagcagtataaataatataataacagtg
ttcatttctgctataacaaaatcattggtaagcacagtcgcatatatttcttcttctttg
gtaaaactagttgcttcattcctcagacagaaagcactgaaaggtttacctattcccagt
atcctttggttagatgaaattgctcggtcacatcctacctcactccattatcatcttaat
caaagacttgattctctgcaactatctgacaacaagactcaggtatctttgaaaatgtta
tgggatatttctatctgtcctgtagacatttgtgaacactttgcaaaggaaaaagttact
tgttttccctattatcatggaaatcagtttgatacctggaaagatgtacagaggaatatt
ttctctgataatgagaatgaccacataaatgataagcaagagaagttagattctggctct
tcttataaagagaccatatctgaacatggtgggaatacgatggataataatggctttgtg
gaaaccggaagaaaacattcaggacccaggacagatattagttattttcacaacccaagg
gaaattactaggagaagtggagaactttttgaggccatatgttttaactccatcaatgag
catgaaattgcaattgcaagcaacaaaaaggggcttatttttttcaacttgaaatatgaa
gaatactcgaggaagcaagcagattatatatggtcagattgtgattggccaaaagatgga
tgggcaggttgtgaatctacaccggttcctacatacatctctcagggaattggccttggg
agcaaaagaggggtgcaccttggtttgggtggtgcaacaattggcatgggctccttggca
agaccacgaagagatctgactggtggtggagcatttgggattccaggttatgctgggatt
ggagcagcaggcttaggttggggcgaagaagagtttgaagagtttagagatcccccagct
acagttgaaaatattcactcaagggcactggcacgccatcctttattgcctttcctgtta
gttggatctagcaacacacatgtctacttatgggagtttggcaagcaaagtgcaacagca
acctatggtgttcttcctgctgccaatgttccacctccttatgcacttgcctcaatatcc
gccctgcaatttgatcattatggtcacagatttgccactgctgcactagatggcacaatt
tgcacatggcaacttgaagtaggtgggaggagcaatgtccaccccacagattcttccctt
tgctttgacaatcacgcatcagatgttgcatatgtggccacaagtggatcaattcttgct
gtggctggaagtagcacgaatggaatcaatgtagttctatgggatactttggcaccacct
gccacatcacaagcttctttattttgtcatgaaggtggtgctcgttctatatcagtgttt
gaccatgttatcgggactggttctatttcgcccataattgttaccggagggagaagtggc
gatgttgggcttcatgacctgcgttacattgcaactggaaagaccagacggaataggcat
gctagtgagcaagatctaaagacaatgcacgctacaaactctgggatttccaagtatgct
gaaaattcgaacgggatgatgtggtatataccaaaagctcatttagcaagcgtaaccagg
atagctactatccccaacaccagcttgttcttaactggtagcaaagatggagacgtgaaa
ctctgggatgccaaaagatctcaattggttttccagtggcaaaaactgcatgaacgacac
acctttcttcaaccaaactcacgcgggtttggtggagtcgtgagagccgctgtcactgat
atccaagttctttcccgtggttttctcacatgcggcggagatggttccacaaaattaatc
caactcaaatag
DBGET
integrated database retrieval system
