Zingiber officinale (ginger): 121970565
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Entry
121970565 CDS
T08725
Name
(RefSeq) RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like
KO
K03093
RNA polymerase sigma-I factor
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
121970565
Transcription machinery [BR:
zof03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
121970565
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r4
Sigma70_r2
GerE
UPF0149
Motif
Other DBs
NCBI-GeneID:
121970565
NCBI-ProteinID:
XP_042377291
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Position
4A:110358603..110361101
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AA seq
489 aa
AA seq
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MGIVAVPSSASRSTFGSGGGFTVRRSPPLRRPFVVLSFKGEPVPKCSEAVVSPPIKEAKK
SPGKRSKRGKGAVVSAAAVAPSADACARDPGYDEVAAALENIYKLSPADVLDWESNGVGN
VVRNRKKRAKRLGLEERVRLRQGKEEEEEESVEAKKRGRRRDLEGEAETLVREYSISTDF
YSLDWKRVKIPPVLSSAEHKWLFELMQPMKAIMQVKEDMSKDLNKEPTDGELADAVNMSI
LQLRRHLEVGQAARNKLIKHNLRLVLFVINKYYPEIATGHKFQEFCQAGVTGLITAIDRF
EPKRGFRLSTYGLFWIRHSIIRSMTLASFTKVPFGIESVRQEIQKAKLELSFELGRQPTE
KEIAERAGISLERYNDVVKASKPVFSLNGKHIVTQEEYINGITDLDREGDKHKQPALLRL
ALDDLLDSLKPKESLVMRQRYGLDGKGERTLGEIAGNLNISREMVRKHELKALLKLKHPT
RVDYLRRYI
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgggaattgtggctgttcccagctcagcctcccgatcgacgttcggcagcggcggcgga
ttcacggtccgccgctcgccgcctctacggcgacctttcgtcgtcttgtccttcaaaggc
gaacccgtccccaagtgctccgaagccgtcgtctcccctcccatcaaggaggcgaagaag
agtcccgggaaacggtccaagagagggaagggcgccgtggtctccgccgccgctgtcgct
ccttctgccgacgcttgcgccagagatccaggatacgatgaggtcgccgccgctcttgag
aacatctacaagctaagcccggctgatgtcttggactgggagtcgaacggggtgggaaat
gtggttaggaacaggaagaagagggcgaaaaggttaggtcttgaagaaagagtgcgtttg
aggcaggggaaggaggaggaggaggaggagagcgtcgaggcgaagaagagaggtcggagg
agggatttggaaggggaagcggagacattagtgagggagtactccatttccaccgatttc
tacagcttggattggaagagggtgaagataccaccagttcttagctcggctgagcacaaa
tggcttttcgagctgatgcaacccatgaaggcaataatgcaagtgaaggaggacatgtct
aaggatctgaacaaggaaccaaccgatggtgagctggcagatgcagtgaacatgagcatt
ctacaattaagaagacatttagaggttggccaagcagcaaggaacaagctaatcaagcac
aaccttcgactggttttatttgttatcaacaagtattatccagagattgcaactggacat
aaattccaagaattttgtcaagcgggtgtcacaggtctcataactgccatcgatcggttt
gaacccaagcgcggcttccgtctgtccacatacggcctcttttggatccgacattccatt
atccgatcgatgacgctcgcaagcttcacaaaagttcctttcgggattgagtcggtcaga
caagaaatccaaaaggccaaactggaactgtccttcgagctgggaagacaacctaccgag
aaagagatagccgaacgagcaggaatctcactggaaagatacaatgatgttgtcaaggca
tcaaaaccagtgttttcgctcaatggaaagcatattgtaacacaagaagaatacatcaat
ggtattactgatctagatagggaaggcgataaacacaaacaacctgcacttctacgacta
gctctcgacgatttactagattcactgaagcctaaggaaagcttggtgatgcggcagaga
tatgggttggatggcaagggggaaaggaccttgggagagattgcagggaatcttaatata
tcaagagagatggtcaggaagcatgaactgaaggcactccttaagttgaagcatccaact
cgagtcgactaccttcgtcgatacatttga
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