Zingiber officinale (ginger): 121970657
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Entry
121970657 CDS
T08725
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03030
DNA replication
zof03420
Nucleotide excision repair
zof03430
Mismatch repair
zof03440
Homologous recombination
zof03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121970657
03420 Nucleotide excision repair
121970657
03430 Mismatch repair
121970657
03440 Homologous recombination
121970657
03460 Fanconi anemia pathway
121970657
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
zof03000
]
121970657
03032 DNA replication proteins [BR:
zof03032
]
121970657
03400 DNA repair and recombination proteins [BR:
zof03400
]
121970657
Transcription factors [BR:
zof03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
121970657
DNA replication proteins [BR:
zof03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
121970657
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
121970657
MMR (mismatch excision repair)
121970657
DSBR (double strand breaks repair)
HR (homologous recombination)
121970657
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
121970657
NCBI-ProteinID:
XP_042377427
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Position
4A:complement(114836277..114839172)
Genome browser
AA seq
635 aa
AA seq
DB search
MAVRLTVNAIAKVNRGKLDLKPVVQLLDLKQVTGAKERYRAVVSDGSAAQQALLAAQLNE
VAESGAVGVGSVVRLLEYVCSTVKNRRIIVIADMKILIRDSETIGNPKLPPEIVSDNPEF
SNSLSIGYSGDQSFNQATNSSSPAKLVSSSVMKSCNKSSSSNAHLQSSYQPPPNYKSHGA
IMKNEAPARIIPIAALNPYQGRWAIKARVTAKGEVRRYNNAKGDGKVFSFDLLDSDGGEI
RATCFNAVVDRFYESIEVGKVYLLSKGSLKPAQKNFNHLNNHWEIFLEATTTLQLCPDED
GSIPTQQFNFRKISDIENAENNSIADVIGIVTSINPSVPILRKNGMETQRRILNLKDLSS
LSVEITLWGEFCNREGRQIEEKLDSGLFPVLAVKAGKVSDFSGKSVGTISSTQLFIDPIL
PETHILREWFDGEGKDASSNSISRDMMPGLPSNDCRKTVSQIKGEGLGRGNKPDWVTVKA
SISFIKTDNFCYTACPLMIGDRLCNKKVMKVPSGRWSCDRCAKEFDECDYRYLLQLQMQD
HTGVTWVTAFQESGVEIIGCSARELYELKHREHNDQRFGDVIQQCLFKQYVFRLKIKEEH
YGDEQQVKVTVVKADKVNPSTECKYLLDLIGKLST
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atggctgtgaggttgacggtaaacgcgatcgcgaaagttaatcgcggtaagctcgacctg
aaaccggtcgtccagttgctggatttgaagcaggtgacgggggcgaaggagcggtaccgg
gcggtggtttccgatggttcggcggcgcagcaagctctgttggctgctcaactcaacgag
gtcgctgagagcggcgcggtgggggttggctccgtcgtcaggctcttggagtatgtctgc
agcaccgtgaagaaccggagaattattgttatcgcggacatgaagattttaattagagac
tctgagacaattgggaatcctaagctgcctccggagatcgtatcagacaatcccgagttt
tcgaatagtctcagtatagggtattccggggatcagtctttcaatcaggctacaaattct
tcctcacctgcaaagcttgtttccagctctgttatgaagtcttgcaacaaaagctcgagt
tcaaatgcacacctccaatcctcataccagccacctcccaactacaagagccatggggca
attatgaaaaatgaagcgcctgctaggataattccgatagctgctttgaatccttatcaa
ggtcgatgggcgatcaaagcacgggtgacagcaaaaggagaggtccgccgatataataat
gctaagggagatggtaaagtattctcctttgaccttcttgattcagatggaggagagatt
cgtgcaacttgtttcaatgctgtggtcgatcgattctacgaatctatagaggttggaaag
gtttacctactatccaaaggaagtctaaaacccgcacagaaaaattttaaccacctcaat
aatcattgggaaatatttttagaggcaacaactactttgcagctctgtccagacgaagat
ggttcaattccaacacaacaatttaatttcagaaaaataagtgatatagagaatgcagag
aacaattcaattgctgatgttattggtattgttacatctattaacccttcagtgcctata
ctaaggaagaatggtatggaaacacaacgaagaattcttaacttgaaggatctatcttct
cttagtgttgagataactctatggggggagttttgcaaccgagaaggtagacaaatagaa
gagaaacttgattctggtttatttcctgtattagctgttaaggcaggaaaagtaagcgac
ttcagtggtaagtcagttggcacgatttcttctacccaactctttatcgatcctattctt
cctgagactcatatcttgagagaatggtttgatggagagggaaaggatgcttccagcaac
tcaatttcgagagatatgatgcccggtctcccttcgaatgattgccgaaagactgtatca
cagatcaaaggtgagggtttgggaagaggaaataaacccgattgggtgacagttaaagcc
agcatctcattcataaagacggataatttctgttacacagcttgccctttaatgatcggt
gacagactgtgcaataagaaagtgatgaaggttcctagcggaaggtggtcttgcgatcga
tgtgctaaagaattcgatgaatgtgattaccgttatcttcttcagttacaaatgcaggac
catacgggagtaacttgggtaacagccttccaggagtctggagtggagatcattggttgc
tcagcgagggagctctatgagctgaagcaccgcgaacacaacgatcagaggtttggggat
gtcattcaacaatgcctctttaagcagtacgtcttcaggctcaaaatcaaggaagagcat
tatggggatgagcagcaagtgaaagtaacagtggtgaaggcagacaaagttaatccttcc
acggagtgcaaatacctacttgatttgataggaaagctcagcacatag
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