Zingiber officinale (ginger): 121970808
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Entry
121970808 CDS
T08725
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121970808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121970808
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121970808
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121970808
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
DUF4857
DUF4092
Motif
Other DBs
NCBI-GeneID:
121970808
NCBI-ProteinID:
XP_042377709
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All DBs
Position
4A:complement(120436307..120437325)
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AA seq
284 aa
AA seq
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MPSLESHKSAVDGGELVQIQIRSVWADNLDAEFDLIREAVERFPFAAMDTEFPGVIHRPR
KHPAALTANERYAVLKANVDALHLIQVGLTLSDSAGNLPDLGGGGETRYLWEFNFRDFDP
LRDLHAPESIELLEANGIDFEKNRARGIDSRRFAELLMSSGLVCNDSAVAWVTFHSAYDF
GYLIKILTRRKLPRNLREFMGLVRVFFGHRVFDMKHMMRYCDSLYGGLDRVASTLRVCRA
VGRCHQAGSDSLLTWQAFRRMKELFFVEDDGEKHAGILFGLEAH
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atgccatcgctggaatcgcataaatcggcggtcgacggcggcgaacttgttcagatccag
atccggtccgtttgggccgacaacctcgacgccgaattcgacctcatccgtgaagccgtc
gagcgcttccccttcgccgccatggacaccgaattccccggtgtgatccaccgcccccgg
aagcacccggccgccctcaccgccaacgagcgctacgcggtcctcaaggccaacgtcgac
gctctccacctcatccaggtcggtctcaccctctccgactccgccggcaacctccccgac
ctcggcggcggcggagagacccgctatctctgggagttcaacttccgcgatttcgacccc
ctccgcgacctccacgcccccgagtcgatcgagctcctcgaggccaacgggatcgacttc
gagaagaaccgggcgcgggggatcgactcccgccgcttcgccgagctgctgatgtcgtcc
gggctggtgtgcaacgactccgccgtggcgtgggtgaccttccacagcgcctacgacttc
ggatacctgatcaagatcctcacccggcggaagctgccgaggaatctccgggagttcatg
gggctggtcagggtcttcttcgggcacagggtgttcgacatgaagcacatgatgaggtac
tgcgacagcttgtacggcgggctggatcgggtggcgagcacgctccgggtgtgccgggcg
gtggggcggtgccaccaggcggggtccgacagtttgctaacttggcaggcgttccggcgg
atgaaggagctcttcttcgtggaggacgacggcgagaagcatgccggaatcctcttcggc
ctggaagctcactga
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