Zingiber officinale (ginger): 121970904
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Entry
121970904 CDS
T08725
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121970904
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
121970904
Spliceosome [BR:
zof03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
121970904
Complex C
U5 SnRNP specific factors
121970904
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
121970904
NCBI-ProteinID:
XP_042377837
LinkDB
All DBs
Position
4A:complement(123299568..123311587)
Genome browser
AA seq
2361 aa
AA seq
DB search
MWSGGPPSSSSSQPPMAPPGTVPGAGIPPPQPPPPAVQPSFSIPPSPAELEAQLVEKARK
WHQLNSKRYGDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFVP
HAVYKLLENMPMPWEQVRNVKILYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKR
DRRHFKRMRFPPFDDEEPPLDYADNLLDVEPLEAIQLELDEEEDAAVHTWFYDHKPLVKT
KLINGPSYRRWHLSLPIMANLNRLAGQLLSDLIDHNYFYLFDMESFFTAKALNMCIPGGP
KFEPLYRDMEKGDEDWNEFNDINKLIIRQPLRTEYRIAFPHLYNNRPRKVKLSVYHTPMI
MYIKAEDPDLPAFYFDPLINPISSVNKVDRRERKVQEEDEEEFYLPEGVEPLLLETQLYT
DTTAAGISLLFAPRPFNTRSGRTRRAEDVPLVSEWFKEHCPPSYPVKVRVSYQKLLKCFV
LNELHHRPPKAQKKKHLFRSLQATKFFQTTELDWVEAGLQVCKQGYNMLNLLIHRKNLNY
LHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANVQFRLGNVDAFQLA
DGLQYIFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWR
VWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILD
AMPEGIKHNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAH
YNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVH
WLESRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQSQREELGLIEQAYDNPH
EALSRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHL
FPNWVKPADSEPPPLLVYKWCQGINNLQGIWDTSDGQCVVMMQTKFEKFFEKIDLTMLNR
LLRLVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGL
TRASEIAGPPQMPNEFITYADTRIETRHPIRLYSRYIDKVHILFRFTHEEARDLIQRYLT
EHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFV
SVYSKDNPNLLFSMCGFEIRILPKVRMTQEAFSNTKDGVWNLQNEQTKERTAIAFLRVDD
EHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENK
IQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFR
SGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQSQNRRLTLEDLEDSWDR
GIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDV
IQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRF
TLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLC
QVLDQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAHRWPMSKPSLVAESKDVFDQ
KASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSA
FGNWFPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSN
QIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLG
QLAKWKTAEEVAALVRSLPVEEQPKQIVVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQ
ACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLL
KPDKTIVTEPHHIWPSLTDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGA
EIAPPSQQRQQIAEIEKQAKEASQLTAVTTRTTNVHGDELIVTTTSPYEQQAFGSKTDWR
VRAISATNLYLRVNHIYVNSDDIKETGYTYIMPKNILKKFICIADLRTQIAGYLYGLSPQ
DNPQVKEIRCIVMAPQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLT
SHARVLENNKQWDGDKCIILTCSFTPGSCSLTAYKLTQSGYEWGRVNKDTGSNPHGYLPT
HYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMRYGVKLGIPRDYYHEDHRPTHY
LEFSNLEEGDTALADAEDKFT
NT seq
7086 nt
NT seq
+upstream
nt +downstream
nt
atgtggagcggcggccctccgtcgtcgtcttcgtcacagccccccatggcgccgccagga
acggtgcccggggctgggatcccccctccccagcccccgcccccggcggtgcagccgtcc
ttcagcataccgccttctccagcggagctggaggcgcagctggtggagaaggccaggaag
tggcatcagctcaactccaagcggtatggcgacaagaggaagttcgggtttgttgagacc
cagaaggaggatatgcctcccgagcacgtcaggaagatcatcagagatcatggagacatg
tcatcgaagaaatatcgccatgacaagcgtgtataccttggagctttgaagtttgtacct
catgcagtttataaattacttgagaacatgcctatgccatgggaacaggttcgcaatgtg
aaaattttatatcacataactggtgcaatcacatttgtgaatgagataccttgggtggtt
gaacctatatacttagcacagtggggtacaatgtggatcatgatgagaagggagaaaaga
gatcgccggcattttaaaagaatgaggtttcctccttttgatgacgaggagcctccatta
gattatgcagacaatttgttggatgtagaacccttagaagcgattcaattagaattagat
gaggaagaagatgctgctgtgcatacatggttctatgaccataaacctcttgtaaaaaca
aagctcataaatggtcctagttacagaaggtggcatctgtcacttccaataatggcaaat
ctgaatcggcttgcgggacaactactttctgatctgatcgatcacaattacttttacttg
ttcgatatggagtcattctttactgctaaagcactgaacatgtgcatacctggaggcccc
aagtttgagccattgtacagggacatggagaaaggtgatgaagattggaatgaatttaat
gacatcaataagctaatcattcgccagccacttagaacagaatacaggattgcatttcca
catctgtacaacaataggccaaggaaagtcaagcttagcgtgtatcacactcctatgata
atgtacataaaagctgaggatcctgatttgcctgcattttactttgatcccttaattaac
ccaatatcttcagtcaacaaggttgatcgtcgggagaggaaagtacaagaagaggatgaa
gaagaattttaccttcccgaaggagttgaacctcttctgcttgaaacacaattatatact
gatacaactgcagctggtatctcattgctatttgcaccacgcccatttaataccagatct
ggtcgcacaagacgggctgaagatgtacctcttgtgtcagagtggttcaaggagcattgt
cctccatcctatccagttaaagttcgcgtcagttatcagaagctgctaaaatgttttgtc
ttgaatgaattacatcatcgacctcccaaggcacagaagaagaaacatttgttccgatct
ctgcaggctactaagttcttccaaacaacagaactagattgggtagaagcaggtctacaa
gtttgtaaacaaggttacaatatgcttaatctgttgattcatcggaaaaatctcaactat
cttcaccttgattacaattttaatttgaaacctgtaaaaacgctcaccacaaaggagcgc
aagaagtcacggtttggaaatgccttccatctgtgcagagaaattcttcgtttgaccaag
cttgtagtcgatgctaatgtccagttccgtctgggaaatgtagatgcttttcaattagct
gatggattgcaatacattttttctcatgttggtcagctgactggcatgtaccgttataag
taccgtttaatgaggcagatcagaatgtgtaaagatctgaagcacttaatctactaccgt
tttaatactggtcctgttgggaagggacctggttgtggattttgggctcccatgtggagg
gtatggttgttttttcttcgaggtattgtaccattgctggaaagatggttgggtaattta
ttagctcgccaatttgaaggccgccattcaaagggggtcgcaaagactgttacaaaacaa
cgagttgaaagccactttgatttggaactaagagctgctgtgatgcatgatattctcgat
gcaatgcctgagggcattaagcataacaaggcaaggactatcttacaacatctgagtgaa
gcatggcgttgttggaaagccaatatcccatggaaggttccaggtctcccagtaccaatt
gagaatatgattctccgatatgtaaaatccaaggcagattggtggacaaatgttgctcac
tacaatcgtgagcgtattagaaggggtgcaactgttgataagacagtttgtaggaagaac
ctaggaagattgactcggttatggctaaaagctgagcaggagcgacaacacaactacctg
aaagatggaccatatgtcaccccagaagaggctgtggccatctatactaccacagttcat
tggttggaatcaaggaagttttctcctattccatttccaccattgtcctacaaacacgac
accaaactccttatccttgcactagagaggttgaaggaatcttatagtgttgcagttaga
ttgaatcaatctcaaagggaagaattgggtcttattgagcaagcatatgacaatccccat
gaagccttatcaagaattaaacgtcacttgctcactcagcgtgcattcaaggaggttgga
attgagttcatggatttatacagttatctgattccagtttatgagattgaacctcttgaa
aaaatcacagatgcataccttgatcaatatttgtggtatgaaggagacaaaagacaccta
ttccctaactgggtcaagcctgcagattcagaaccaccaccacttctagtatacaaatgg
tgccaaggtattaataacttacaaggcatatgggacacaagtgatggtcagtgtgtggtg
atgatgcaaacaaagtttgagaagttttttgagaaaattgatttgactatgcttaatagg
cttttgcgcttggttcttgaccacaatattgctgattatgtcactgccaaaaacaatgtt
gtgttatcatacaaggatatgagccacaccaactcatatggtcttattcgaggcctgcaa
tttgcttcctttgttgtgcagtattatgggcttgtgcttgatctattgctcctcggttta
acccgagccagtgaaattgctggtcctcctcagatgcccaatgaattcattacatatgca
gacaccagaatagagactagacatcctattcggttatattcccgttacattgacaaagtg
cacatactattccgattcacacatgaggaggcacgagacctaattcagcggtatctaact
gagcatccagatccaaacaacgaaaacatggttggatataataacaagaaatgttggcct
agagatgcacggatgaggttgatgaaacatgatgtcaatcttgggcgaagtgttttttgg
gatatgaaaaatcggcttccgagaagcattacaacgttggaatgggaaaatagcttcgtg
tctgtttatagcaaggacaatcccaatctccttttcagcatgtgtggatttgagattcga
atattgcctaaagtaagaatgactcaagaagcttttagtaacaccaaagatggtgtttgg
aatttacaaaatgaacaaaccaaggaaagaacagcaatagccttcttgcgtgttgatgat
gaacacatgaaggtatttgagaatcgtgtgaggcagattcttatgtcatcaggttcaaca
acttttaccaagattgttaacaaatggaatactgctcttattggtcttatgacatatttc
cgagaagccactgtgcatacacaggagttgttggatttgctggtcaaatgtgaaaacaag
atacagactcgtattaaaattggattgaactcaaagatgcctagcagatttcctcctgtt
atcttttacacaccaaaggaaattggaggccttgggatgctttccatgggacacatattg
atcccacagagtgacctaaggtatagccaacaaactgatgttggagtgacacattttagg
agtggtatgagtcatgaggaagatcagcttatccccaatctttaccgctatatacagcct
tgggagagtgagttcattgattcacagcgtgtttgggctgaatatgcattgaagaggcaa
gaagcacagtcacaaaatagaagattgacgcttgaggatctagaggattcttgggataga
ggcatacctcgaatcaacaccttgttccagaaagaccgccacacattagcatatgataaa
ggatggagggttcgtactgatttcaagcaatatcaagttttgaagcagaatccattttgg
tggacccaccagaggcatgatggcaagctttggaacttgaacaactatcgtactgatgtt
atccaagcacttggaggagtggaaggaatcctggaacacactttatttaaagggacatat
ttcccgacctgggaaggtctcttctgggagaaggcatctggattcgaggagtctatgaag
tataagaagttaaccaatgcacagcggtcaggtctgaatcaaattccaaatcgtaggttt
actttgtggtggtcacccaccatcaatcgtgccaatgtatacgtcggcttccaggtccaa
cttgatctgacaggaatatttatgcatgggaaaattcctaccttgaagatatctttgatt
cagatattccgtgctcacctttggcagaagatccatgagagtgttgttatggatctttgc
caagttttggatcaagagttggatgcattagaaattgagactgtgcagaaagagactata
catccaaggaaaagttacaagatgaacagctcttgtgctgacgttctcctctttgctgca
catcgatggccaatgtccaaaccaagccttgttgctgaatctaaggacgtatttgaccaa
aaagcaagcaacaaatactggattgacgtgcaacttcgttggggggactatgattcccat
gatatagagcgttatactagggctaagtttatggactatacaacagacaatatgtccata
tatccatcacccactggagttatgattggactggatttggcatacaatttgcactcggcc
tttggcaattggttccctgggtcaaagcctttgctagctcaagcgatgaacaagatcatg
aagtcaaatccagctttatatgtgctgagggaacgaataaggaaaggtttgcagctatat
tcatctgagcctactgaaccatatctctcatcgcaaaattatggagagattttcagcaac
caaatcatatggtttgttgatgatactaatgtgtatagagtaacaatacataaaactttc
gagggaaatctcaccactaagcccattaatggtgctatcttcatcttcaatccaaggaca
ggacaactatttctaaaggtcatccatacaagtgtttgggctgggcaaaagcgtcttgga
caactggccaagtggaagactgcagaagaagtagcagctctcgtgcggtctttgccagtt
gaagagcagccgaagcaaattgttgtcactcgtaaaggaatgttggatcctttagaagtc
catttgcttgacttccccaatattgtaatcaagggtagtgaactccagttgccttttcag
gcttgcttaaagattgagaagttcggtgatctgattttgaaggctactgaacctcagatg
gttctttttaatatctatgacgattggttgaaaagtatttcatcctacactgctttctcc
cggcttatattgatattgcgggcactgcatgttaacaatgagaaagcaaagatgctcttg
aagcctgacaagaccattgtcactgaaccacaccatatatggccttcgctgactgatgat
cagtggatgaaggttgaagttgcacttagagatctcatactttctgattatgcaaaaaag
aacaatgtcaatacatccgcgttaacacagtctgaaatacgagacataatattgggtgca
gagatagcaccaccctcacagcagaggcaacagattgctgaaattgagaaacaggctaaa
gaagctagccaattgacagcagttacaacaaggacgacaaatgttcacggcgatgagctt
atagttaccacaactagtccatatgagcagcaagcatttggttccaaaaccgattggcga
gtcagggccatttcagctacaaatctttatcttcgtgttaaccacatttatgtgaactcg
gatgatatcaaggagactggatatacttacattatgcctaagaacatattgaagaagttc
atctgcatagcagatttgagaactcagattgctggttacctttatgggctgagccctcaa
gataacccacaagtgaaggagatccgctgcatagtcatggcaccgcaatggggaacacat
cagcaggtccacttaccatcagctctacccgagcacgattttttgaacgacttagaacca
ttgggatggatgcacacacaacctaatgagcttcctcagctatccccacaggatctgaca
tctcatgctcgggtactagagaacaataagcagtgggatggtgacaaatgtattattttg
acctgtagcttcactccaggttcctgctccttgactgcatataagctcacacaatcgggg
tacgaatggggacgtgtcaataaggacactggaagcaacccccatggttatctacctaca
cactatgagaaagtgcaaatgcttctgagtgaccgtttcctaggattctatatggttcca
gacaatggtccatggaattacaacttcatgggagtaaagcataccgtgagcatgcgatac
ggagtgaagttggggataccaagagactactaccatgaggatcacagacccacacattac
cttgaattcagtaatcttgaagaaggcgatactgcattggcagacgcagaggataagttt
acatag
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integrated database retrieval system
