Zingiber officinale (ginger): 121971009
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Entry
121971009 CDS
T08725
Name
(RefSeq) E3 ubiquitin-protein ligase UPL4-like isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121971009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
121971009
Enzymes [BR:
zof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
121971009
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
HECT type E3
121971009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
HEAT_2
Arm
HEAT_EZ
ARM_ARMC5
Htt_N-HEAT_1
Motif
Other DBs
NCBI-GeneID:
121971009
NCBI-ProteinID:
XP_042377997
LinkDB
All DBs
Position
4A:complement(125966685..125974966)
Genome browser
AA seq
1502 aa
AA seq
DB search
MDRGRKREGAADLRADKRACSSSDHRPCSSASGSPPPQPPHSEMESSSSGRSDRGGDSGY
GSCDSDDYAGGYDSRSVRGRLHRVLVGLADDGSGGSEQLAALTELCEVLSFCMEDAMGYF
PVESVVPPLVKLAGHESNPEVMLLAIRALTYLCDSMPRSADAIVRHGALPVLCGRLLAIE
YLDVAEQCHQALEKISRKQPIACLQAGTANAVLTYIDFFPSSIQRAAVSTIANMCKKLPP
DCSSSIIESVPTLCALLQNEDTKLVETVAICLARIADSIGSSSNLLDELCKLGLIQKSLE
LITNDGHRTLSRVTYSGLIALLTKLAGNSQLAVQTLFELNISRTLRNVLLGSDMSDDSAY
ASTEDLQINQVYEVLKLANQLIPPRERDPDNQLTEAKEKIQMVVPNFLDQFATEILPASI
KVVNSDANPYVCYGCVSIISRIAYYSAPDTLLKSIKDINISYFLAGLLLKKDPHILLSTL
ETVEILMQKLPGFFLSSFIKEGVVHAIDALLSEDKCTEPVLGHSDDQMVVKDISRCLCYS
FALSRVPSSEAKTCKIVKESIHNLGRHIKATYFANGAMSSDMGFTETLQNLKTLCKVLTE
SVDIHLNSDNSLQDEENLTQMLDQVMRAFSQEDPMSTFEFVESGLARSLIHYLSNGKYPL
GTHSVGLSSHILTILKRFQTFAFICLSKPCQSCDNTILVILLKKLQNALSSLDNFPVIVS
QGYKARNTYADIPARCCTMNPCLRVRFVREKAESHLSDYNNVLNVDISSSVDDIEGYLWP
KVSENKNVNLTESMDNNISKLKLTSSRSNHTSEGDSIETHTNISNETCISNSSEVIRSQE
QLLPTETSPLQSTSGVKSGPEITITASPSIGEAKQKLTFSLSGKQLDRSKTLYQAVLEDQ
MSSESHMVVGSRFWNQLYKLTYRVAEDENSSKGQLLDCVSQSNILLNKLGFSWQKLPFFP
TIFQIEMPSNFDKMSSTYDILFMLKILEGLNHFSLELLTDERVGAFAEGKIDNLDDLKVI
IPSVPELGFVNSKLSDKLEQQLRDPLVLTTGYFPSWCSQLMNSCSFLFSFEARWKYFYLT
AFGSLKNQQNSIQHSNSPGTNSSSDSLTFPRKKFKVDRNKILECAMKMMELHVHSKGSLE
VEYDEEVGTGLGPTMEFYTLLSHEFQKAGLGMWREDLCHSVGESGLLSAPFGLFPRPWST
TTGVLGGTEFSDVIKKFLLLGKLVAKTIKDGRILDIPFSRGFYKIMLEQVLSICDIQSFD
SELGRTLLEFQAVINRKMFVESVPGKSHGVPSNLNYRGISVKDLSLDFTLPGYSDYALSS
ESTKLVNIDNLEEYVALVVDATIGSGIERQVDAFKSGFNEVFPLKALKIFNEDELERLLC
GEQDTWDFTELVDHIKFDHGYTMSSPTVINLLEIIQEFGCDQRRAFLQFVTGAPRLAHGG
LAALNPKLTVVRKHGSCDADLDLPSVMTCANYLKLPPYSSKEKMREKLMYAITEGQGSFH
LS
NT seq
4509 nt
NT seq
+upstream
nt +downstream
nt
atggatcgaggtcggaagcgcgagggcgccgccgacctccgtgcggacaagcgcgcgtgc
agctcgtccgaccaccgcccctgctcctccgcctccggctccccgcccccgcagccgccg
cacagcgagatggagtcctcctcctcggggaggtccgatcgcggcggggattccggatac
gggtcgtgcgactccgacgactatgctgggggttacgactcgcggtccgtgagggggagg
ctgcacagggtcttggttggcctcgcagacgacggctcggggggatccgagcagctcgca
gcgctgaccgagctctgcgaagtgctctccttctgcatggaggacgccatggggtacttc
cctgtggagagcgtcgtgccgccactcgtgaagcttgctggtcacgagagcaatcccgag
gtcatgcttttggcaataagagcgctcacctacctctgtgattcgatgccgaggtccgcg
gatgccatcgtgcggcatggcgccctacctgtcctgtgcggaaggcttttggctatcgaa
tacttggacgtggcagaacagtgccaccaagcattggagaagatatcgcggaaacaaccg
attgcttgtttgcaagcaggaacagcaaatgctgtcttaacttatattgatttctttcca
agtagtattcagagagctgcagtttcaacaatagccaatatgtgcaagaaactgcctcct
gattgctcttcaagtattatagaatcagtccctactttatgtgcccttctccagaatgag
gatacaaaattggtggaaactgttgctatttgtcttgcacggatagctgactctattggc
tcttcctccaatttgctggatgaactatgcaagcttgggttaatacaaaagtccttggaa
ttaataactaatgatggtcataggacactcagccgtgtaacttattctggtttaattgct
cttctcaccaaacttgctggaaattctcagctagcagttcagaccctatttgagctcaat
attagcagaactctgagaaacgtcttattaggttctgacatgtcagatgattctgcttat
gcatctactgaggatttgcaaatcaatcaggtatatgaagttttaaagttagctaaccag
ttaatccctccaagagagagagatccagacaatcaattaacagaagctaaggaaaagatt
caaatggttgtgcccaatttcttggatcagtttgcaacagaaattcttcctgcttctatt
aaggttgtgaactctgacgcaaatccatatgtatgttatggctgtgtttccatcataagc
cgcattgcctattacagcgcacctgacacacttctgaagtcaattaaagatataaatatc
tcatattttttggcagggctgttgctcaagaaagatccacatatattactttctacactg
gagacagttgagattctgatgcaaaaacttcctggttttttcttaagctctttcatcaag
gaaggagtagttcatgcaattgatgcacttctttcagaagataaatgcacagagcctgta
cttggacactcagatgatcaaatggtagtaaaagatatttccaggtgcctgtgctattca
tttgctttatctagggttccatcctcagaagcaaagacatgcaagattgtaaaagaatct
atccacaatctgggaaggcacattaaagcaacctactttgctaatggagcaatgagctct
gatatgggatttactgaaacccttcaaaatctcaaaactttgtgcaaagtgctaactgaa
agtgtggatatacatttaaatagtgacaatagtctccaggatgaggagaatttaactcaa
atgttagaccaggtaatgagagctttttctcaggaagatcctatgtcgacctttgagttt
gtcgagagtggtcttgcaagatctctgatccattatttatcaaatggaaagtatccactt
ggaactcattctgttgggttatcaagtcacattctcaccatactaaagagattccagaca
tttgctttcatttgcttatcaaaaccatgtcaaagttgtgacaataccattttggttatc
ttgctgaagaagctgcagaatgcattgtcttcgttggataactttcctgttattgtaagc
cagggttataaggcaagaaacacttatgcagatatccctgctaggtgctgcaccatgaat
ccctgcttaagagttcgctttgtccgtgaaaaagcagagtcacacttgtccgactataac
aatgttctaaatgttgatatttcttcatcggtagacgatatagaaggatatctctggcct
aaagttagtgaaaacaagaatgtaaatctgacagaatctatggataataacatcagcaaa
ctaaaactcacttcttcaaggtcaaatcatacttcagaaggggattctatagagacacac
acaaatatctccaatgagacatgtatttccaactcttcagaggtaattagaagtcaagaa
caacttttgccaacagaaactagtccactgcagtcaacatctggtgtgaaatctggtcca
gaaataaccataacagcatctcctagcataggagaggcaaagcaaaagttaacttttagc
ttaagcggaaaacaactcgaccgctctaagacgctctatcaagcagttctagaggatcag
atgtcttcagaatctcacatggttgtggggtcaagattttggaatcaattatacaaactt
acttacagagtagctgaagatgaaaactcaagcaagggccaactcttagattgtgtttct
cagtcaaacatcctcttgaataagcttggattctcctggcaaaaacttcctttttttcct
actatatttcaaatcgagatgccttctaactttgataaaatgagttcaacatatgatatt
ttgtttatgttgaaaatattggagggcttgaatcacttttctttggaattgttgactgat
gaaagagtcggagcatttgctgaagggaaaatagataaccttgatgatctgaaagtgata
atcccttcagttccagaactggggtttgtgaacagtaaattatctgataagttggagcag
caactcagagaccctctggtgttgaccactggttattttccatcatggtgtagccagtta
atgaattcatgctctttcttattttcttttgaagcaagatggaagtacttctacctcaca
gcttttggttctttgaaaaatcaacaaaatagcatacaacattcaaatagccctggcaca
aactccagcagtgatagcctcacttttccacgcaagaagttcaaagttgataggaacaag
atccttgaatgtgctatgaaaatgatggaattacatgttcatagtaagggttctcttgaa
gtagaatatgatgaagaagtgggtactggtctaggtcctacgatggaattctacacatta
ttaagtcatgaatttcaaaaggctggattgggtatgtggagagaggacctttgtcacagt
gtcggtgaatctggattattgtcagctccatttggactgtttcctcgtccatggtcaaca
acaacaggtgtgttgggtgggactgaattctctgatgtgataaaaaagtttctcctcctt
ggtaagctggtagccaagacaatcaaagacggaaggatattggacataccattttctaga
ggcttctataagattatgcttgagcaggtgctgagcatatgtgatatccagtcatttgat
tcggagcttggaaggactttgctggagtttcaagctgttatcaataggaaaatgtttgtc
gaatcagttcctggaaaaagccatggggttccatctaacttaaattataggggtatcagt
gtgaaggatctttctcttgatttcactcttccaggctattctgattatgcactttcctcg
gagagtacaaaattggttaatattgacaacttggaagaatatgttgcgctggttgtagat
gcaacaattggcagtggaattgagagacaagttgatgccttcaagtctgggtttaatgag
gtattccctctgaaagctcttaagattttcaatgaagatgagctggagagactactatgc
ggtgaacaagatacttgggatttcactgagcttgtggatcacatcaagttcgaccatgga
tatacaatgagcagccctactgttatcaatttgttagaaatcattcaagaatttgggtgt
gatcaacgtagggctttcttacaatttgttactggtgctcctcgactcgcacatggtggc
ttagctgcacttaaccctaaactaacagttgttcgcaagcatggtagctgtgatgctgat
ttggatttgccaagtgtgatgacttgtgctaattatctaaagctcccaccttactcttcc
aaggagaaaatgagagaaaaactgatgtatgcgataaccgaaggtcagggatcgtttcac
ctctcgtaa
DBGET
integrated database retrieval system
