Zingiber officinale (ginger): 121971023
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Entry
121971023 CDS
T08725
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121971023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121971023
03009 Ribosome biogenesis [BR:
zof03009
]
121971023
04131 Membrane trafficking [BR:
zof04131
]
121971023
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
zof04147
]
121971023
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
121971023
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
121971023
Membrane trafficking [BR:
zof04131
]
SNARE
SNARE associated proteins
Others
121971023
Autophagy
Aggrephagy
Other aggrephagy associated proteins
121971023
Exosome [BR:
zof04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
121971023
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_2
AAA_5
AAA_22
AAA_33
AAA_14
TIP49
NPHP3_N
RNA_helicase
nSTAND3
AAA_17
AAA_28
Mg_chelatase
ATPase_2
AAA_18
Parvo_NS1
IstB_IS21
ABC_tran
Viral_helicase1
AAA_7
NACHT
NB-ARC
AAA_24
TsaE
DUF815
Vps4_C
Sigma54_activat
Zeta_toxin
Sigma54_activ_2
Zot
Motif
Other DBs
NCBI-GeneID:
121971023
NCBI-ProteinID:
XP_042378024
LinkDB
All DBs
Position
4A:126306783..126312964
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AA seq
810 aa
AA seq
DB search
MANPGEASSSDPKGKKDYSTAILEKKKAPNRLVVDEAINDDNSVVSMHPETMEKLQLFRG
DTILLKGKKRKDTICIALADDTCDEPKIRMNKVVRSNLRVRLGDVVSVHQCQDVKYGNRV
HILPIDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYC
IVAPDTEIFCEGEPVKREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGV
KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEK
NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDP
ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALC
TEAALQCIREKMDIIDLEDESIDAEILNSMSVTNEHFKTALGSSNPSALRETVVEVPNVS
WDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC
QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGG
AADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRYQ
IFKACLRKSPVAKDVDQGALAKYTQGFSGADITEICQRACKYAIRENIEKDIEREKKKSE
NPEAMEEDDEADDVAEIKAVHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF
AERSEAAPGATGSDPFATSAVADDDDDLYS
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacccgggcgaggcttcctcttccgatcccaaggggaagaaggattacagcacg
gcgatccttgagaagaagaaggctcccaaccgtttggttgtggatgaggcgatcaatgac
gataattcggttgtttcgatgcatcccgaaacgatggagaagctgcagttgtttcgcggc
gataccatactcttgaaggggaagaaaagaaaggatacaatctgtattgctctagctgat
gatacatgcgatgaaccaaagatcaggatgaacaaggttgtcagatcaaatctcagggtg
aggcttggtgacgttgtatctgtccatcaatgccaagatgtcaagtatggaaatcgtgtc
cacatacttcccattgacgacacaattgaaggtgttacagggaacctgtttgatgcatat
ttaaaaccttattttttggaagcatatcgtcctgttagaaaaggggatcttttccttgtc
aggggtgggatgaggagtgttgagtttaaggttatagaaactgatcctgcagagtactgc
attgttgctcctgatacagagattttctgtgagggggagccggtaaaaagagaagacgag
gacaggcttgatgaggtaggttatgatgatgttggaggagttaggaaacaaatggctcag
ataagggagctagtagagcttcctctaagacatcctcaactatttaaatctattggtgtc
aagccgccaaaaggtattttgttgtatggtccacctggttcaggtaagacattaatagct
agagcagttgcaaatgagacaggagcttttttcttttgcatcaatggtccagagatcatg
tcaaagctagccggtgagagcgagagtaatttgaggaaggcttttgaggaagcagagaaa
aatgcaccctcaattatcttcattgatgagattgattccattgctcctaagagagagaaa
actcatggggaagttgaaaggcgcatagtgtctcaactgttgacactgatggatgggttg
aagtctcgtgctcatgtaattgtcattggggctacgaacaggccaaacagtattgatcca
gctcttagacgattcggtaggtttgacagagaaattgacattggtgttcctgatgaggtt
ggccgattggaggttcttcgcatccatactaagaacatgaagctatctgatgatgttgat
ttggaaaggattgctaaggatacccatggctatgttggggctgaccttgctgctttatgc
actgaagctgctctccagtgtatccgtgaaaagatggacataattgatctagaagatgaa
tcaattgatgctgaaattctcaattctatgtctgttacaaatgaacactttaagactgct
ttgggatctagtaacccatctgccctccgtgaaactgttgttgaagtaccaaatgtcagc
tgggatgatattggtggactggaaaatgtcaagagggaactgcaagagactgtgcaatat
ccagttgagcatcctgagaaatttgagaagtttgggatgtccccttccaagggagtcttg
ttttatggaccacctggatgtggtaaaacattgctggctaaggccattgccaatgaatgc
caagcaaatttcatcagtgtcaagggtcctgaattgctgaccatgtggtttggtgaaagt
gaagcaaatgtgcgtgagatatttgataaggctcgccaatctgcaccatgtgtgctcttc
tttgacgaacttgactccattgcgacccagagaggcagcagtgtcggtgatgcaggaggc
gctgctgatagggttcttaatcagctactgacggagatggatggcatgaatgccaagaaa
acagtattcattatcggggcaaccaacaggcctgacattatagatcctgctctacttagg
ccaggccggctggaccagttgatttatattcctttgccagatgaggcctctcgttaccaa
atatttaaagcttgcttaagaaagtctccagtggcaaaagatgttgaccagggggctctt
gcaaagtacactcagggatttagtggtgccgacatcacagaaatttgtcaacgggcatgc
aaatacgcaattagagaaaacatcgaaaaggacattgaaagagaaaagaagaagagtgaa
aatcctgaagcaatggaggaagatgatgaggctgatgatgttgcagagatcaaggctgtt
catttcgaagagtcaatgaagtttgcccgcaggagtgtcagcgacgctgacattcgcaag
taccaggcatttgctcagactttacaacagtcgcggggttttggaagtgagttccgtttt
gcggagcgttctgaagctgcacctggagccaccggctcagacccttttgccacttcagct
gttgcagacgatgacgatgatttatatagctaa
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