Zingiber officinale (ginger): 121971085
Help
Entry
121971085 CDS
T08725
Name
(RefSeq) protein transport protein SEC16A homolog isoform X1
KO
K20353
COPII coat assembly protein SEC16
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zof04131
]
121971085
Membrane trafficking [BR:
zof04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
121971085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Sec16
Sec16
Motif
Other DBs
NCBI-GeneID:
121971085
NCBI-ProteinID:
XP_042378119
LinkDB
All DBs
Position
4A:complement(127214055..127225851)
Genome browser
AA seq
1427 aa
AA seq
DB search
MASSSPSHVVDQTDDDRDFFNNLVDGDFGGNGSHIRSKEIARDLSNLSLDDTGTFVDDPD
DAGLISESNGPQKSETLQLAGYPEDVLASHDSPTVNYSPDKVATSESSSASILETAMQST
SPTNNAGSRGTCIKQVQWSAFSLGTQQSDNVGLETSSDFFVENVNPSDKLNSNADFNFLH
VENQVKNVDTHTNSQNNQESQLFSSVIDQNTGGVDAQYWERLYPGWKYDSITGEWYQLDG
YNENVITQDNYTSGVVSQGNFNDNAEAAANVGSSEDLYLQQISQSALETIAEESTSANTA
TTYNWNIVYQENMEFPPNMVFDPQYPGWYYDTNTQQWYTLESYTQTTKIPNVVQNEAIAS
AGFSEGSYSVYDEVGRPDQRTDISLGSQEFWHGADLSSSYSHQQNMLQAKQISENRFSHN
QQMQSFYKPSTATITRVDNDTALQTFKPMVNHGFGFTNGAIMQYNSANEESTYPVYLQNL
PHSMQQSISNSFLGNHNSVDFRQPSFQDTKDSYSMFSHAPDEGRSSAGRPAHTLVSFGFG
GKLVVTKNSNSSRTNLDYGIQEYPAGAISILNLSEVVKNELDASNFVSGTVLDYFHPLFK
QKFPGPLVGGSASTKDINKWLDERILSYDGPVMEFHKGKFLKLLLSLLRISLQHYGKLRS
PFGSDLSLEDLNGPEEAVCKLFASSKISSPFGGYGSYAHCLNNIPPESQLQATAARVQSL
LVSGKRKEALQSAQVGQLWGLALVLAAQLGDKFYVDTVKKMAQHQFAFGSPLRSLCLLIA
GQPADVFSADNAVNFLSMALPIQSAEVKSSGMLDEWQENLAIVTANRTKDDELVIIHLGD
CLWKDKGEVTAAHTCYLVAEANIEPYSDSARLCLIGADHLKYPRTYASPDAIQRTELYEY
SKVQGNSQFILLPFQPYKIIYAHMLAEVGKIPDSLKYCQSASKLLKSSARTSELEIWKSV
LSSLEDRLRIHQQGGYGSSLAPGNLVGKLFTTFDRSIHRMIGAPAAPLPPLPPGNVNDKE
TSYSVAPKVSNSQSTMAMETSYSLVPSASVETMTEWSSNNTSKIRHNRSVSEPVFGQIPK
QDSSSDGAQSKATSGGSRFGRIGSQLLQKTMGWVSRSHQQAKLGERNKFYYDEKLKRWVE
EGADPPAEEAALPPPPTAKSFQNGMLDYKISNTFKSESIIDDTFKPVSVGDKEGPAAEPL
APSKQKSAIPPIPPSQNQFSAHGKVGIRSRYVDTFNKGSGGGGPFTKPFQSPALPSTKPL
VSTKFFMPASPPSTEERPTDTASESNQDATSTTGEDPPEPVTREASFSPPASSSIPSTGE
DPPESATRAASFSPPASSSIPRFLSSSSIAHLGNTDSGAASSLAISRATSWSGNYELLNQ
TTTGRRPWQGPTMFSPTRSMPASPIGSSSTLQQNDASLSDDLQQIEL
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atggcatcttcctctccttctcatgtggtagatcagactgacgacgaccgtgatttcttc
aacaatctagtggatggagattttggtgggaatggatctcatattcgttccaaagaaatc
gcgagagatttatctaacctcagtcttgatgatactggtacgtttgtggatgatcctgat
gatgctggattaatttcagaatcaaatggtccacaaaaaagtgaaacattgcagcttgca
ggttatccagaagatgttttggcttctcatgatagtcccactgtgaattattcaccagac
aaggtagccacatcagaaagttcttctgcaagcattcttgagactgcaatgcaaagcaca
tcgccaactaataatgctggatctaggggaacgtgtataaagcaggttcagtggagtgcc
ttcagtcttggcacacaacagtctgacaatgttgggttggaaacttcttcagatttcttt
gttgagaatgtcaatccatctgacaaattgaattcaaatgctgattttaattttctccat
gtggaaaatcaagttaaaaacgtggacacacacacaaattcccagaataatcaagagtca
cagcttttcagttcagttattgatcagaacacaggtggtgtagatgcacaatactgggag
agactttaccctggttggaagtatgattcaatcactggggaatggtatcagttggatggc
tataatgaaaacgtaattacacaagataactatacttcaggagtagtttcacagggaaat
tttaatgacaatgcagaagctgctgctaacgtgggtagttcagaagatctatatcttcag
cagatttcgcagtcagccctggagaccatagctgaagaaagtacatcagctaatactgct
acaacttacaattggaacattgtttatcaggagaacatggaatttcctcctaatatggtc
tttgatcctcagtatccagggtggtattatgataccaacacccaacagtggtataccctg
gagtcttacactcagactacaaaaataccaaatgtagttcagaatgaggctattgcttca
gctggcttctcagaagggagctatagtgtatatgatgaagttggtcgacctgatcaaagg
actgatatatccctagggagccaagagttttggcacggggctgatctatcaagcagctac
tctcatcagcagaacatgctgcaggcgaaacaaattagtgaaaatagattttctcataac
cagcagatgcagagcttttataaaccaagcactgctacaataactcgtgtagataatgac
acggctcttcagacattcaaaccaatggtgaatcatggttttggctttaccaatggggca
attatgcaatacaactctgccaatgaagaaagtacatatccagtttatcttcaaaatctg
ccacatagtatgcaacaaagtatatccaacagctttttaggcaatcataactcagttgac
tttcgacagccttcatttcaagatacaaaggattcttattccatgttttctcatgctcct
gatgaaggcagatcatcagctggtcgtcctgcacatactttggtttcttttgggtttggt
gggaagcttgtagttactaaaaatagcaactcttctcgaacaaatttagactatggaatt
caggaatatcctgctggtgcaatctctattcttaacttatctgaggttgtgaagaatgaa
cttgatgcatccaattttgtttctggcaccgtgttggattacttccatcctttgttcaag
caaaaatttcctggtccccttgttggagggagtgcttctacaaaggatataaataaatgg
ttagatgagagaatcttgagctatgatggtcctgtcatggaattccacaaagggaaattt
ttgaagttgcttctttcattgctccgaatatcattgcagcattatggcaaacttcgatct
ccttttggatctgatctatcactagaggatttaaatggtccagaagaggcagtatgtaaa
ctttttgcttcctctaaaattagtagtccttttggaggttatggttcctatgctcattgt
ttgaataatattccaccagaaagtcaacttcaggcaactgccgctagggtacaaagcctt
cttgtttctggtaaaaggaaggaggctctccaatctgcacaagtaggtcagttgtggggc
cttgctcttgttcttgctgcacagcttggagacaagttttatgttgacacagtgaagaag
atggcacaacatcaatttgcatttggttcacctttacgatcactatgtcttcttattgct
gggcagcctgcagatgtattttctgcagacaacgcagttaatttcttatctatggcttta
cctatacagtcggcagaggttaaatccagtggtatgttggatgagtggcaagaaaattta
gcaattgtaactgcaaacagaacaaaagatgatgaattggtaattattcatcttggggat
tgtctgtggaaagacaaaggagaggtaactgctgctcacacttgttacttggttgctgaa
gcaaatattgaaccatattcggacagtgcaaggctctgtcttattggtgcagatcacttg
aagtatccaaggacatatgcttcacctgatgctattcagcgaacagaactttatgaatat
tcaaaggtgcaaggaaattcccagtttatcctactacctttccagccatacaagataatt
tatgcccacatgctcgctgaagttgggaagatccctgattcattgaagtactgtcaatct
gcttcaaaattgctgaagagttctgctcgtacttccgagcttgaaatttggaagtcagtg
ttatcctctttagaggatagactgcgtattcaccaacagggtggttatggttcaagcttg
gctcctgggaatctagttggaaagttgtttaccacctttgatagatctattcatcgcatg
attggtgcaccagcagcacctcttccaccattgccaccagggaatgtaaatgataaagaa
acatcatattcagttgcccctaaagtatcaaatagccagtcaacaatggctatggaaaca
tcatattctttagttccatcagcatcagtggagaccatgactgaatggtcaagtaataat
actagtaaaattaggcataacagaagtgtttcagaacctgtgtttggacaaatcccaaaa
caggattcgagctcagacggtgcacagagcaaggcaacatctggtggctcgcgctttgga
cgcattggctcacaacttctacagaaaaccatgggatgggtgtcgagatcacatcaacag
gcaaaactgggcgaaaggaacaagttctattacgatgaaaagcttaagagatgggtggag
gaaggagctgatcctccggcagaggaagctgcccttcccccacctccaacagcaaaatca
ttccagaatggtatgctggattacaagatcagtaatactttcaagagtgaaagcatcatc
gatgatactttcaagccagtaagtgttggcgataaggaaggaccagcagctgaacctttg
gctccatcgaaacaaaaatctgcaataccaccaattccacccagccaaaatcagttctca
gcacacggcaaagtgggcattcggtccagatatgtggatacattcaacaagggcagcggc
ggcggtggccccttcacaaaacctttccagtcacctgcacttccgtcaacaaaaccattg
gtcagcacaaagtttttcatgcccgcctcaccaccatccaccgaggaaaggccgactgat
acagcaagcgaaagcaaccaagatgccactagtaccactggcgaagatccacctgaacct
gtgacaagagaagcatccttttccccaccagcttcatcctccattccttccactggcgaa
gatccacctgaatctgcaacaagagcagcatccttttccccaccagcttcatcctccatt
ccccggttcctgagctcgagcagcattgcacatcttgggaacacagactctggagctgct
tcttccttggccatatcgagagccacatcctggagtgggaattatgagctactcaatcaa
actacaacaggcaggaggccatggcagggtcctacaatgttctcacccactcgcagtatg
ccagccagcccaattggcagctcatcaaccttgcagcagaatgatgcttctctctcggac
gacctacaacagattgaactctga
DBGET
integrated database retrieval system
