Zingiber officinale (ginger): 121971099
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Entry
121971099 CDS
T08725
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121971099
09123 Folding, sorting and degradation
03018 RNA degradation
121971099
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121971099
03041 Spliceosome [BR:
zof03041
]
121971099
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121971099
mRNA degradation factors
5'-3' decay
Lsm complex
121971099
Spliceosome [BR:
zof03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
121971099
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
DUF150_C
Motif
Other DBs
NCBI-GeneID:
121971099
NCBI-ProteinID:
XP_042378147
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Position
4A:127663602..127669224
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AA seq
99 aa
AA seq
DB search
MSGRKETVLDLAKFIDKGVQVKLTGGRQVMGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT
TDQTRRLGLIICRGTAVMLVSPTDGTEEIANPFIQPDGA
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcaggaaggaaacagttctagatttggcaaagttcatcgacaagggtgtccaa
gtgaagctgacaggggggagacaagtgatggggactttaaaaggctatgatcagctgctt
aacttggtgctagatgaagctatagagtttctcagagatcctgatgatccactgaagacg
acagaccagacaagacgccttggccttataatatgtagggggactgccgtaatgctcgtg
tctccaactgatggaacagaggaaattgcaaacccctttatccagccagatggagcttaa
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