Zingiber officinale (ginger): 121971106
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Entry
121971106 CDS
T08725
Name
(RefSeq) ubiquitin receptor RAD23b-like
KO
K10839
UV excision repair protein RAD23
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03420
Nucleotide excision repair
zof04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121971106
09124 Replication and repair
03420 Nucleotide excision repair
121971106
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
zof03051
]
121971106
03400 DNA repair and recombination proteins [BR:
zof03400
]
121971106
Proteasome [BR:
zof03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
121971106
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
121971106
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
Rad60-SLD
TECR_N
CUE
Ubiquitin_2
CorA
UBA_RAD5A
Dsc3_N
RNase_PH_C
MCM_N
Motif
Other DBs
NCBI-GeneID:
121971106
NCBI-ProteinID:
XP_042378159
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Position
4A:127877456..127885455
Genome browser
AA seq
396 aa
AA seq
DB search
MVAMKLTVKTLKGTHFEIRVQPSDSIMAVKKNIEQVQGKDNYPWGQQLLIHNGKVLKDET
TLEENKVSENGFLVVMLSKSKAAGTSGASSGQPSATSVVQPSPKEAQPQISSQIPPQAPQ
QTPQQALVSENSSTGSAQSQRPNAELSDAYGQAASNLVEGSNNEQLISQLMEMGGGNWDR
ETILRALRAAYNNPERAVEYLYSGIPSTAEIAISGDSFPSSEVSAQGVNATNLAAIGPLF
GVTNSAPNSSPLNMFPQANANSGGGTAGGSLDFLRNNQQFLALRAMVQANPQILQPMLQE
LSKQNPQLLRLIQDHHAEFLHLINEPIEDLEEDLFDQPDQDEMPHTISVTPEEQEAIGRL
EALGFDRARVIEAYLACDRNEQLAANYLLEHAGDED
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atggtcgctatgaagctgacggtgaagacgctcaagggcacccacttcgaaatccgggtc
cagcccagtgattcgattatggctgtgaagaaaaacattgagcaagtacaagggaaagac
aattatccatgggggcagcagttactgattcacaatggaaaagtattgaaagatgaaacc
acactggaagagaacaaagttagcgaaaatggttttctcgttgtcatgcttagtaagagt
aaagctgcaggcacaagtggagcttcatctggtcagccttcagctacttctgtagttcag
ccttctcctaaggaggctcaaccacaaatttcatcacaaattccaccacaagctccccag
caaacaccgcaacaagctcttgtctcagagaattcatcaactggatctgctcaatctcaa
cgacctaatgcagagttatctgatgcctatggtcaagctgcatcaaatttagttgaaggg
agcaataatgagcagttgattagtcaattgatggaaatgggtggtggcaactgggacagg
gagacaattctgcgtgcacttcgtgctgcatacaataatcctgaacgcgccgtggaatac
ctatattctggcattccatcaacagcagaaattgcaatttctggtgattctttcccttca
tctgaggtatcggctcaaggggtcaacgcaaccaatttagctgctatagggcctttattt
ggagtaacaaattctgctccaaattcgtctcctttgaacatgttcccacaggcaaatgcg
aattctggagggggtactgcaggtggatctctcgacttcctcagaaataaccaacaattt
ttagctttgcgagcaatggttcaagcgaatccacaaatattgcagccaatgctccaggaa
ttaagcaaacaaaacccccaattgttgcgattaatacaggatcatcacgcagagtttctt
cacttaataaatgaacctattgaagatcttgaagaggatctgtttgatcaacctgatcaa
gatgagatgccacatacgattagtgtaacacctgaagagcaggaagcaattggacggctt
gaagcattgggttttgaccgggcacgagtaattgaagcatacctagcctgtgacaggaac
gagcaactggcagcaaactatttactggaacatgctggagatgaagattga
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