Zingiber officinale (ginger): 121971112
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Entry
121971112 CDS
T08725
Name
(RefSeq) splicing factor-like protein 1
KO
K13095
splicing factor 1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121971112
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
121971112
Spliceosome [BR:
zof03041
]
Complex A
Other components
Complex A specific factors
121971112
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF1-HH
KH-I_KHDC4-BBP
RRM_1
KH_1
KH_12
eIF3g
zf-CCHC
KH_PNO1_2nd
PHD_4
RRM_5
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
121971112
NCBI-ProteinID:
XP_042378171
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All DBs
Position
4A:127983519..127989723
Genome browser
AA seq
756 aa
AA seq
DB search
MDEAPAEIRSFQTLIPPPPSTPPSPPLTVHEPLDQGFPPPPPAEAPFDPYQDHAPPFITP
AKQDALPAKLDDRQVISGNAVTHSGTDKDASGGEEEASSRRRRRRSRWEPTPSEADQNGG
DAAGDGSGRKRKSRWAEEEPKPVVQLPDFMKEFTADLDPEVQALNFRLLEISRRLQSTLP
LDDRPEGARSPSPEPIYDNMGIRINTREYRARERLNKERQEIISQLIQRNPAFRPPADYR
PPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSIKEGKLLQKR
DYKPDPAENEDLHVLVEAETQDSLEAAASMIEKLLHPVDEVLNEHKRQQLRELAALNGTI
RDEEFCRLCGEPGHRQYACPARTSTFKSDVLCKICGDGGHPTIDCPMKGTVKKMDDEYQN
FLAELGGAGPESSTKQSSTLPLLGSSAPGTNLGGVQSLIKKDYDETNLYIGYLPPAFDDD
SLIRLFSPFGDIVMAKVIKDRITGLSKGYGFVKYSDVSMANQAISSMNGYHLEGRTIAVR
VAGKPPQPTAPPVSVPPAPPASVGAYPSQQYMPGAPLTNPPPPPGSYAPVPWGPPVPPPY
APYVPPPPGSSMYTPVQGQSVPPYTMQYPLQQQTAPPGVPGQNMPSSEAMQNLPPGVQPQ
SSTTTVALPVPTDMYGSGSVPGVSPPVPPPSFAPATYGYAPYYVPVPPPHSFDPTQSIGN
VPWAHSAMPPQPASSAEQSTTHASDAEYEKLMSELK
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagcccccgccgaaatccgatccttccaaaccctaattccgccgcccccctct
acgcctccttcccctcctttgacggtgcatgaacccctagatcagggcttccccccgcct
ccccctgccgaagccccattcgatccctaccaggaccacgcgccccctttcatcacccca
gccaagcaggatgccctcccagcgaagctcgatgaccggcaggtgatatccggaaacgcg
gtcactcacagcggcactgacaaggacgcctcaggcggcgaggaggaagctagcagtcgc
cgccgtcgccggcgtagccggtgggagcccactccgtccgaggccgatcagaacggtggc
gatgcggctggcgatggtagtggtaggaagaggaagtcccgatgggcggaggaagagccg
aagcccgtcgttcagctcccagacttcatgaaggagttcactgcagatcttgatcctgag
gtacaggccctcaatttcaggcttcttgagatcagccgtcgcttgcagtccaccttgcct
ctagatgatcgtcctgagggtgcccggtcgccgtcccctgagccgatctacgataacatg
ggcatccgaatcaatactcgtgagtatagggcgcgggagaggctgaataaggaacggcag
gagattatttcccaactgattcagcggaacccagcgttccgtcctcctgctgattatcgt
ccaccaaagctccaaaagaagctctatattcctatgaaggagtatccaggctataacttc
attggtcttatcattggtccgcgaggaaatacacaaaaaaggatggagaaggagacaggg
gcaaagatcgtcatcaggggaaaagggtctatcaaagaaggtaaattgcttcagaagagg
gactacaagccagatccagctgagaatgaagatttacatgtcctggtggaagcggagaca
caggactcactagaagctgctgcttccatgattgagaaacttctgcatccggttgacgag
gtgctgaacgaacacaaaagacagcagctgagagaacttgcagccttgaatggaactatc
agggatgaggaattctgtaggttgtgtggtgagccaggacacaggcagtatgcttgtcct
gcgcgcacttcaacatttaagagcgatgttctttgtaaaatttgtggtgatggtgggcat
cccacgattgactgccccatgaaaggaacagttaagaagatggacgatgagtaccaaaac
tttttagctgagcttggtggtgctggtccagagtcttccacgaagcagagttctacattg
ccacttcttggttcaagtgctccaggaactaatcttggtggtgtacaaagtctgattaag
aaagactatgatgaaacaaatctttatattggatatttgcctcctgcttttgacgatgat
agcttgattaggttgttctccccctttggtgatattgtaatggcaaaggttatcaaggat
cgaatcactggacttagtaaaggttatggtttcgtgaagtactctgatgtatccatggct
aatcaggcaatatctagtatgaatggttatcatctggaaggaagaactatagctgttcgt
gtggctggcaagccaccacagcctacagcaccgccggtgtcggtgcctccagctcctcca
gcatcagttggtgcatacccttctcagcagtacatgcctggcgcacctcttacaaaccca
ccacctccgcctggtagttatgctccagttccctggggaccacctgttcctcctccttat
gcaccctatgttccacctccccctggttctagcatgtacacccctgttcaaggtcagtca
gtgcctccctataccatgcagtatccccttcagcaacaaacagcccctcctggtgtccca
ggtcaaaatatgccttctagtgaagcaatgcagaaccttcctcctggagttcaacctcag
agttctactactactgttgccctccctgtaccaactgatatgtatggtagtggttctgta
ccgggagttagcccacctgttcctccaccttcatttgctccagcaacttatggctatgca
ccttattatgttcctgttccaccacctcatagttttgatcccacgcagagcattgggaat
gtaccatgggcccatagtgcaatgccacctcagcctgcatcctctgctgaacaatcaact
actcatgcttcagatgcagaatatgagaaattaatgtcagagttgaaatga
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