Zingiber officinale (ginger): 121971479
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Entry
121971479 CDS
T08725
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1-like
KO
K14411
RNA-binding protein Musashi
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121971479
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121971479
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
121971479
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
121971479
NCBI-ProteinID:
XP_042378705
LinkDB
All DBs
Position
4A:complement(139940360..139951119)
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AA seq
455 aa
AA seq
DB search
MDSDEGKLFVGGISWETSEEKLKEHFSDYGEVLDAVIMRDKASGRPRGFGFVVFGDPAIL
DRVLQDKHVIDDRTVEAKRALSREEQQTSQRSGNPNSGNSNAGRSAGAGFGANIRTKKIF
VGGLPPTLTEDGFRQYFEAYGMVTDAVVMYDQNTHRPRGFGFISFESEDTVDKVLQKTYH
DLNGKAVEVKRALPKDANLNSGSSRPMGSVSHHSYGGSSGNASSYDGRTDANRYMQSQGA
VGGLQAYGSSGYGAPSYGYGATNNGVGYAGYGVGGYGTGATGYTGPAGAYGNPNAPMAGY
VGGPPGAQRNLWNNQVPGYGSAGYGGAASYGPGGGSGATPTGQSGTSGYMGQGYGYGGYG
GSEGPYGNQGGYGSYGTRGSGGPVNNSAGNAGEQGGSAYTGGGYGNASSGYPNAWKSDPS
QTGSYGSSQVNGPPGGSASYGGGYAGPQGRQVQQQ
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atggattcggacgaggggaagctcttcgttgggggtatctcgtgggaaacatcggaggaa
aagctcaaggagcacttcagcgactatggcgaggtcctcgacgccgtcatcatgcgggac
aaggcctcgggacgccccaggggttttgggtttgtcgtctttggcgaccccgctattctt
gatcgcgtcctccaggacaagcacgtcattgatgaccgcactgtggaagccaaaagggct
ctgtcgagggaagagcaacaaacatctcaaagatctggaaatcccaattctggaaattct
aatgctggtaggtcagctggagcaggttttggtgcaaacataaggaccaaaaagatattt
gttggaggcttgcctccaactctaaccgaggatgggtttcgtcaatactttgaggcctat
gggatggtgactgatgcagttgtgatgtatgatcaaaacactcatcgccctcgaggcttt
ggtttcatttcttttgaatcagaggatactgtagataaagttcttcagaagacttatcat
gatctgaatggaaaggctgtggaagttaagcgtgcccttccgaaggatgcaaatctaaat
tctggcagtagccgacctatgggaagtgtatctcatcattcatatggtggctcaagtggc
aatgctagttcttatgatggtaggacagatgctaataggtacatgcaatctcaaggagct
gttggtggccttcaggcgtatggttcctctggctatggtgcacctagttatgggtatgga
gcaacaaacaatggtgttggctatgcaggttatggtgtggggggttatggcaccggtgcc
actggttacactggacctgctggtgcctacggaaatcctaatgctccaatggctggttat
gtaggtgggcctccaggagctcaaagaaatctctggaataatcaggttcctggttatggt
tctgcaggatatggtggagctgcatcttatggtccaggtggtgggtctggtgcaacacca
accggtcaaagtggaacctctgggtacatgggtcaaggttatggatacggtggatatgga
gggtcagaaggaccttatggtaatcaaggtggatacgggtcctatggtactcgtggtagt
ggtggccctgttaataattctgcaggcaatgcaggagaacaaggaggttctgcttacaca
ggtggaggttatggtaacgcaagctcaggttatcccaatgcttggaagtcagacccttca
caaactgggtcatacggatcttctcaggtgaatggcccgcctggtggttcggctagttat
ggaggtggttatgctggtcctcaaggtaggcaagtccagcagcagtga
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