Zingiber officinale (ginger): 121971488
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Entry
121971488 CDS
T08725
Name
(RefSeq) replication factor C subunit 2-like
KO
K10755
replication factor C subunit 2/4
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03030
DNA replication
zof03410
Base excision repair
zof03420
Nucleotide excision repair
zof03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121971488
03410 Base excision repair
121971488
03420 Nucleotide excision repair
121971488
03430 Mismatch repair
121971488
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
zof03032
]
121971488
03036 Chromosome and associated proteins [BR:
zof03036
]
121971488
03400 DNA repair and recombination proteins [BR:
zof03400
]
121971488
DNA replication proteins [BR:
zof03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
121971488
DNA Replication Termination Factors
ELG1-RFC complex
121971488
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
121971488
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
121971488
Check point factors
HRAD17(Rad24)-RFC complex
121971488
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
AAA_22
Rad17
RuvB_N
RCF1-5-like_lid
Mg_chelatase
AAA_11
AAA_16
SLFN-g3_helicase
AAA_5
AAA_14
AAA_assoc_2
AAA_24
nSTAND3
ResIII
AAA_2
PhoH
AAA_28
AAA_30
AAA_19
AAA_7
AAA_25
RNA_helicase
NPHP3_N
DUF815
bpMoxR
TIP49
GpA_ATPase
Cdc6_lid
DNA_pol3_gamma3
AAA_18
Parvo_NS1
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
121971488
NCBI-ProteinID:
XP_042378718
LinkDB
All DBs
Position
4A:complement(140306575..140324373)
Genome browser
AA seq
340 aa
AA seq
DB search
MAPLLPSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTAL
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKSFAAVAVGSGSHQGYPCPPFKIIIL
DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDIMSS
RILHISSEEGLTLDSEAISALSLISQGDLRRAITYLQSAARLFGSSISAKDLISVSGVIP
HESVEALFRACRSGNFDVANKEVNNIIEEGYPVSQMLYQLLEVIVNGDDISDEQKARICK
KFGEADKCLIDGADEYLQLLDVASNTMRALCNMSEELRFD
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atggcaccacttctcccgagctcgcagccatgggtggagaagtaccggccgaagcaggtg
aaggatgtcgcccaccaggatgaggtcgtccgagtcctcaccaacaccctagagactgct
agctgccctcacatgctcttctacggcccacccggcacagggaagaccaccactgcactc
gccatcgcccaccaactatttgggccagaactttacaaatcaagagttttagaactcaat
gctagcgatgatcgaggaattaatgttgtgcgaacaaagatcaaatcttttgctgctgtt
gctgtgggttcaggatctcatcaaggatatccatgtccacctttcaaaatcattatactt
gatgaagctgattcaatgacagaagatgcacagaatgccttgagacgtaccatggagact
tactcaaaagttactaggttcttctttatatgcaattatatcagcaggattatagaaccg
ctagcttctagatgtgcaaaattcaggttcaagcctctttctgaggatattatgagtagt
cgtatcttgcacattagtagtgaagaaggcttgactcttgattctgaggctatttctgca
ttgagcttaatctctcaaggggatcttcgccgtgctatcacatacctgcagagtgcagca
cgattgtttgggtcgtccatttctgccaaagacctaattagtgtttcaggggttatccct
catgaatcagttgaggcactgtttagagcatgtagatctggcaattttgatgttgctaac
aaagaggttaacaatattatagaagagggatatccagtctcccaaatgctttatcagttg
ttagaggtgatagttaatggtgatgacatatccgatgaacagaaggcaagaatctgcaag
aaatttggtgaagcagataagtgcttaattgatggagcggatgaatacttgcaacttctg
gatgtcgccagtaacacaatgcgagctctctgcaacatgtcagaggagctgcgttttgat
taa
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