Zingiber officinale (ginger): 121971536
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Entry
121971536 CDS
T08725
Name
(RefSeq) transcription initiation factor TFIID subunit 2 isoform X1
KO
K03128
transcription initiation factor TFIID subunit 2
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121971536
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
zof01002
]
121971536
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
121971536
03036 Chromosome and associated proteins [BR:
zof03036
]
121971536
Peptidases and inhibitors [BR:
zof01002
]
Metallo peptidases
Family M1
121971536
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
121971536
Coactivators
SAGA/TFTC/STAGA complex
121971536
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
121971536
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M1
HEAT_2
Motif
Other DBs
NCBI-GeneID:
121971536
NCBI-ProteinID:
XP_042378792
LinkDB
All DBs
Position
4A:complement(142923272..143049823)
Genome browser
AA seq
1323 aa
AA seq
DB search
MAKPRKQKNDEQKAESSGVVVLHQKLCVSVDMEKRRIFGYTELKTIVPEDGHMSFNADNM
IITNISVDGEPVDFTHFPHYQVIEEDSIPSVSCPSSAADVACSVYISSLDKEMVPNLHIS
YGGSGKINQQQEKDNGENSAQDSISQQLNCYNGHSEDKNVKLVRIDYWIDRAETGIHFAD
NMLLTDSQIRRVHCWFPCLDNISQRTLFDLEFTVDATLVAVSSGDLLHQVLSKDDPPRKT
FVYKLITPVSAKWITLVVAPFEILPDNHSNIISHICLSQDFKKLQNTVGFLHNVLSHYED
YLSTSFPFGSYKQIFIPPELTISSWSFGASLCIFGSDILFDDSVIDQTIDTRIKLAHALS
RQWFGVYITADEPTDEWLLDGLAGFLTDTYIKRFLGNNEARYRRYKANLAVCKADVSGAT
ALSSSAASSELYGTQQIGLYGKIRSWKSIAVLQMLEKQIGPESFRKILQIIVKPNDSTRS
MRKVSTKEFRHLANKVGNLERPFLKEFFPRWVESCGCPILRMGLSYNKRRNMIELAVIRG
CTAKPASSFAGSQDDENRESDIGWPGMMSVRVHELDGVYDHPVLPMAGEMCQLIEIQCHA
KLAAKRFQKPKKGSKPDGSDDNADGTSTQDIRSGIESPLLWVRVDPEMEYLAETQFYQPV
QMWINQLEKDKDVIAQSHAISMLKILPQISFAVVNALNSFLNDSKAFWRVRIEAAYALAH
TTSSETDLAGLLHLIKFYKRRRFDADIGLPRPNNFHDVPEYFVLEAIPHAVALVRASDKK
SPREAIEFVLQLLKYNDNSGNPYSDVYWLSALVKSIGEVEFGQQGILLLPSLLKRIDQLL
QFDRLMPSYNGILTVSCIRTLVQIALKMPNSSTIGRIYELIQPYRNVEKSSWKVRIEASR
ALLDLKYHSDGIDAVLTLFINFLEGETSLRGEVKLAVHVMHICQVEFESETEKQVQLSTS
IALLRLLTSRKAFNNIFLRHYLFCILQILAGRSPTIHGVPRVQLPATVSAETGSQQVTRP
VHLKLKIPRPQEPVSDNGKAPEVLPPAETNKEGDTISNCSEKRVNVIKIRVRQLSSSSKV
DEIDHHMDYSRACTNDVELGPCSSVSVDAPARATDPLNVSNQNNLEADSAHDRGSRMTAS
IGSAKIASMDELGKDLQCTADSRLAGLSKAQLSPTDFKVDETVDEIATLQEHPMHRLGVE
ATVSLDNEQPRENKKYKDKEKKRKRDDKDKKDDPEYLEKKRLKKERKRMEKELAKMQKDG
DKVSELKISPRNTESSSPFIDAKKAEQNVETHVVASKDNKSETSKGTFPTKLRIKIKSRN
TDN
NT seq
3972 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcctcggaagcagaagaacgatgagcaaaaggccgagagctcgggagtagtt
gtcctccaccagaagctctgcgtctcggtcgacatggagaagagaagaatattcgggtat
acggaattgaaaaccatcgtcccagaggatgggcatatgtctttcaatgctgataatatg
atcattaccaatatatctgtggatggtgaaccagttgacttcacgcatttccctcattat
caagttattgaagaggatagtatcccttctgtatcatgcccaagctcagctgctgatgtt
gcatgctctgtgtacatatcttccttagacaaagaaatggttcccaatctacatatctcg
tatggtggatcaggaaagataaatcagcaacaggagaaagacaatggtgaaaactctgcg
caggactccatcagccagcagctaaattgctacaatggtcattcagaggataagaatgtg
aagttagttcgcattgattattggatagatagggcagaaactggtattcattttgcggac
aatatgttgctcactgatagtcaaataaggcgtgttcattgctggtttccttgcttggat
aacatttcacaacggactctatttgacctagagttcacagttgatgctactcttgtagct
gtcagcagtggggacttacttcatcaggttttaagcaaagatgatcctccccgtaaaact
tttgtgtataagttgatcactcctgttagtgcaaagtggataacattagtagtcgctcca
tttgaaattcttccagataatcatagcaacattatatcacacatctgcctgtcacaagac
tttaaaaagcttcagaatacagttggttttttgcataatgtattgagtcattatgaagat
tatctttccacatcctttccctttggctcttacaagcaaatcttcatcccgcctgaacta
acaatatcttcttggagctttggtgcatccctttgcatctttggctctgatattttgttt
gatgacagtgttatagatcagacaattgataccagaattaagcttgctcatgctctttca
aggcaatggtttggagtatacatcactgcagatgagccaactgatgagtggctactagat
ggcctagctggctttctgactgacacttatatcaagcgcttcttgggtaacaatgaggca
cgttataggaggtacaaggctaacttagctgtttgtaaagctgatgttagtggtgctact
gctttgagctcctctgctgcttcaagtgagttatatgggactcagcagattggtttgtat
ggaaagattaggtcctggaaatctattgcagttcttcaaatgttggagaagcaaataggc
ccagaatcgtttcgcaagattcttcagattattgtgaagccgaatgactcaactcgttcc
atgagaaaagtgagcactaaagagtttagacatcttgctaacaaagttggaaatttggag
cgccccttcctaaaagagttcttcccacgttgggtggaatcctgtggatgccctatattg
cggatgggcctctcttataacaaacgaagaaatatgatcgagctagctgttattagaggg
tgcacagcgaagccagcttcatcttttgctggtagtcaagatgatgaaaatcgagaaagt
gacattggttggcctggaatgatgagtgttcgtgttcatgaacttgatggagtgtatgat
catccagttctgcctatggctggtgagatgtgtcagttgattgaaatacagtgccatgcc
aaattagctgcaaagcgtttccagaagccaaagaaaggttctaaacctgatggctctgat
gacaatgctgatggcacttcaactcaggatatccgcagtggtatcgaatcacctttgctg
tgggtccgagtagatcctgaaatggaatatcttgcagaaacacaattttatcaacctgtt
cagatgtggatcaatcaattagagaaggacaaggatgttattgctcaatcacatgcaatt
tcaatgttgaaaatactaccacaaatttcttttgctgttgttaatgctcttaatagcttc
ctaaatgattcaaaggcattttggagagttcggatagaagctgcatatgcgttggcacat
actacatcttcggaaactgatttggctggactactgcatttgattaaattctataagaga
cgaagatttgatgctgatattggtttaccaaggccaaataactttcatgatgttccagag
tactttgttttagaggccatcccacatgcagtagctctagttcgagcatcagataaaaaa
agccctagagaagcaattgaatttgttctgcaattactaaagtataatgataacagtgga
aacccctattcggacgtgtattggctttctgctcttgtcaaatcaattggcgaagttgaa
tttggtcaacagggcatacttcttttaccatcccttctcaaacgtattgatcaactgttg
caatttgacaggcttatgcctagttacaatgggattttgactgtaagctgcattcgcacc
ttagtacagattgcattgaagatgccaaattcttccactattggacgcatttacgaactt
atacagccatatagaaatgttgaaaagtcatcatggaaggttcgaattgaagcaagcagg
gcacttctagatcttaagtatcacagcgatggcattgatgctgttttaacattgttcatc
aactttttggagggagaaacttcattaagaggcgaggtgaagttggctgttcatgtcatg
catatatgccaggttgaatttgaatctgagacagagaaacaagtacagttgtccaccagc
attgctctgcttcgcctgctaacaagcagaaaagcattcaacaacattttccttcgccac
tacttattctgcattttgcaaattcttgctggaaggtctccaacgattcacggtgtacct
agagttcaactacctgctacagttagcgctgaaactggtagccagcaagtgacaagacct
gtgcatctaaagttgaagatacccaggcctcaggaacctgtttcagacaatggtaaagct
cctgaagttctgcctcctgcagaaactaataaagagggtgatactatttctaactgtagt
gagaaaagggtaaatgtaatcaagattagggttaggcaactttcgtcatcaagtaaggtg
gatgaaattgatcatcatatggactattctcgagcttgtacaaacgatgttgagttagga
ccttgcagttctgtttctgttgatgcacctgcaagagcaactgatccattgaatgtcagc
aaccagaataatttggaggcagattctgctcatgatcgtgggtctaggatgactgcaagc
attggcagtgcaaagatagcaagcatggatgagcttggtaaagatttgcaatgtactgct
gattcgaggctggctggactttcgaaagctcaactatctcctactgactttaaagttgat
gagacagttgacgaaatagctactcttcaggagcacccaatgcatagacttggagtggaa
gcaactgtctctcttgataatgagcaacctagagaaaataagaaatataaggacaaagaa
aagaagcggaaacgagatgacaaagacaagaaggatgatcctgagtatctggagaaaaag
cgccttaagaaagagagaaagcggatggagaaagaattggccaaaatgcaaaaggatgga
gataaagtttctgagttgaagatatctcctagaaatactgaatcaagcagcccttttatt
gacgccaagaaggcagagcagaatgtagaaactcatgtggtagcaagtaaagataacaaa
agtgagacaagtaaaggaaccttcccaactaaactcagaataaagataaaaagcagaaat
actgacaactag
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