Zingiber officinale (ginger): 121971763
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Entry
121971763 CDS
T08725
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4-like isoform X1
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
zof04812
]
121971763
Cytoskeleton proteins [BR:
zof04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
121971763
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Katanin_con80
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_EML
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SPT8
eIF2A
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_VPS8
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_DCAF12
VPS8_N
Beta-prop_RIG_1st
WDR54
PROPPIN
Motif
Other DBs
NCBI-GeneID:
121971763
NCBI-ProteinID:
XP_042379123
LinkDB
All DBs
Position
4A:154011769..154021869
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AA seq
785 aa
AA seq
DB search
MATAKRAYKLQEFVAHSSNVNCLKIGRKTSRVLVTGGEDHKVNLWAIGKPNAILSLAGHM
SAVESVSFDLSEVLVAAGAASGSIKLWDLEEAKIVRTLTGHRSNCIAVDFHPFGEFFASG
SLDTNLKIWDIRRKGCIHTYKGHTRGVNAIKFTPDGRWVVSGGEDNTVKLWDLTAGKLLH
DFKFHEGQIQCIDFHPNEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRSMIFNPDG
RTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDMNIHEGKLLGCSYNQSCVGVWVVDLS
LIEPYAIGVAANLNGEAKSILSGNLSMQTDSNIKSNMGKLSISQSSEPNPKETKLPPSST
GILSTPQKVGTSGAPKTTATAPSAVASITAKRSSTKSNVATSLQAINKTNIIPVIVPRSS
PRPDLSSDSASSDSAKETDVGRTIQSDIQSKFSSFRNAPNIREDSDKADVSKSGFVASRN
TEQHELLGQNAISSGISITQALTVAGANNLDDVRHVATARARTNLFRETVSNYDQETYNI
RVQKPMEASSFVVPKGGRTRSLVANFERRDQSRAQSPSYGPSLSSSPETGVGAISNSLSQ
NQYTEEETLSASDENSIAFLLKKHHQFLNLARTRLTKLQVVHRLWRRNDVKGVIGAIERM
SDHSVSADIVSALKDKSDVITLDICTSLLPHLTSLIESKMDRHLSVSLEMLLKLIRIFGP
VIRSTLSADPSSVGVDLQAEQRLERCNLCFIELEKVQQKIPSMTRKGGSIAKTAQELNLA
LQEVL
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccgccaagcgtgcttacaaactacaggaatttgttgcacattcctccaatgtg
aattgtctaaagataggaaggaagacttcgagggttctggttactggaggagaggatcac
aaggtcaatctttgggctattggaaaacccaacgctatattgagcctagcaggacatatg
agtgcagttgaatccgtaagttttgatttgtcggaggtactagtggctgcaggtgcagct
agcggttcaataaagttgtgggatttggaagaagcaaaaattgttcgtactctcacaggc
cacaggtcaaattgtatagcagttgattttcatccatttggtgaattctttgcctctgga
tcactagatacaaatctaaaaatatgggatatcagaagaaaaggatgtatccatacttac
aaaggtcatactcgaggagttaatgccattaaattcactccggatgggcggtgggtcgtt
tctggtggggaagataacactgtgaagctttgggatcttactgctggaaaacttctgcac
gatttcaaatttcatgagggtcagattcagtgcattgatttccaccccaatgaatttcta
ctggcaacaggctcagctgatagaactgttaagttttgggatcttgaaacttttgagtta
ataggatctgctggacctgagacttctggtgtgcgttctatgatctttaatcctgatggg
agaactttgctttgtggactgcatgaaagtctcaaggttttttcttgggaaccaataaga
tgccatgatgctgttgatgtggggtggtctagattatcagatatgaatattcatgaagga
aaacttcttggatgttcatataatcaaagctgtgttggagtgtgggttgtggacctctct
ctcattgaaccatatgcaattggtgttgctgccaatttaaatggggaagcaaagtctatc
ctaagtggtaatttatctatgcaaactgatagtaatataaagtctaatatggggaagcta
tccatttcacaaagttcagaacctaatcctaaggagacaaaattgccaccctcaagtaca
ggcatccttagcactcctcaaaaggtagggacaagtggtgcccccaaaacaactgctaca
gcaccttcagcggttgcttctattactgcaaaaagaagttcaacaaaatctaatgttgcc
acaagtctgcaggccatcaacaaaacaaatattatacctgttattgtccccagaagtagc
cctaggccagatttatcctctgattctgcatcctctgattctgctaaagagactgatgtt
ggaaggacaatacaatctgatatccagtcaaaattttctagtttcagaaatgcaccaaac
atcagagaagattctgacaaagcagatgtctcgaagtctggatttgtggcgagtagaaat
actgagcagcatgaacttctgggccaaaatgctatatcttctggcatttccataacacaa
gcattgacagtagctggagcaaacaacttggatgatgttagacatgttgcaacagcaagg
gccagaactaatttattcagagagacagtttcaaattatgatcaggaaacttacaacatt
agagtccaaaagccaatggaagcatcttcttttgtagttcccaaaggaggaagaacaagg
tcgcttgtagcaaattttgaaaggagggatcaaagtagggcacaatctccaagctatgga
ccaagcttaagtagttctcctgagacaggagttggagctatctcaaattctttgagtcaa
aatcaatatactgaagaagaaaccttatctgcttcggatgagaattctattgcattttta
ttgaaaaaacatcaccaatttttaaatttggcccgaactcggttgaccaaattacaggta
gttcaccgactttggcgaagaaatgatgttaaaggtgtcataggtgctattgagcgaatg
tctgatcatagtgtctctgctgacatagtcagtgctctcaaagataaaagtgatgttatc
actttggatatatgcacatccctcctgccacatctcaccagccttatcgaaagcaagatg
gataggcatttgagtgtttccctggaaatgttgctgaagctgatcaggattttcggtcct
gtaatccgttcaactttgtcggcggacccatcttctgttggtgttgatcttcaagcagaa
cagaggttggaacgatgcaatttgtgcttcattgagctggagaaggtccagcaaaaaatt
ccttccatgacaagaaaaggaggatccattgcaaagactgcacaagaactgaatcttgct
ctccaggaagtgctatga
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