Zingiber officinale (ginger): 121971791
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Entry
121971791 CDS
T08725
Name
(RefSeq) regulation of nuclear pre-mRNA domain-containing protein 1B-like isoform X1
KO
K15559
regulator of Ty1 transposition protein 103
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
121971791
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121971791
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
CID
POL2_thumb
CTK3
ALIX_LYPXL_bnd
Pol_alpha_B_N
Motif
Other DBs
NCBI-GeneID:
121971791
NCBI-ProteinID:
XP_042379161
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All DBs
Position
1B:complement(110176762..110195910)
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AA seq
525 aa
AA seq
DB search
MTDAFNNQILVEKLSKLNNSQQSIQTLSNWCVINRKKAKNIVETWDIAFNNSPREKRVPF
LYLANDILQNSRRQGSEFVNEFWKVLPGCLKNVYENGEDHGKKAVNRLVEIWDERKVFGS
RGRGLKDEILGTVPAPVSNNGKSNSNPIKLIRKDTDSVRVKLALGEMPEKIVTAYQSVFD
EYSNEDTALSKCNDAAQVLERVEKNIDIVTKQGDQQGPTFITDLQNQEAVLKQCIEQLET
AKSTRATLVYQLTEALKEQEFKLDLINDKLQIAHSLSEHAGSMRRQRLLLAAGESSFDPT
SSLPMSNPQLPPPHSVTSFAGSVSSAEDDHKKAAAAVAAKLAASSSSAQVLSSILSSLAA
EEAASMGNSLNSQVLSDGQAAFPLEKKPRLEKLISTPDMGIHSYFSQAQPQQHQSIPFQS
QSIQAPPTFTPPLPPLPPLPPPSLQQCAQTNGVTNMGPFPFPGSSVPPPPLSHASLGFTR
PIIPPIPPPPPPPQQHQQSTSMGFYQSPGVGFYGQPQTAPTVQPQ
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgactgatgctttcaacaaccagatattagttgagaagctctcgaagctcaataattca
caacaaagtattcaaaccttgtcaaattggtgtgtcattaaccggaagaaagcaaaaaat
atagttgagacatgggacatagctttcaacaattctccaagagaaaaaagagtgcctttt
ctatacttggccaatgacatcttacagaatagtagacgccaaggaagtgaatttgtgaat
gaattttggaaagtacttcctggatgtttaaagaatgtctatgagaatggtgaagatcac
ggaaagaaagcggtgaatcgattagtagagatttgggatgaaagaaaagtatttggctct
cgtggacgaggcctaaaggatgagatccttggtactgtccctgcccctgtttcaaacaat
ggcaagagcaattcaaatcccatcaaattaattcggaaagatactgattcagtacgagta
aaactagctcttggtgaaatgcctgaaaagatagtgactgcatatcagtctgtgtttgat
gaatattccaacgaagatactgctttgagtaaatgcaatgatgctgctcaagttctggag
agggtggaaaagaacattgatattgtaactaaacaaggtgaccaacaagggccgacattt
ataactgatcttcagaaccaggaagctgtacttaaacaatgtatcgaacaactagaaact
gcaaaatcaactagagctacactggtttatcagctgacagaagctctaaaagagcaggaa
tttaagctggatctcattaatgataagttacagattgcccattccctcagtgaacatgcc
ggtagcatgcggcggcaacgactactcttggctgcaggggaaagcagttttgaccctacc
tctagcctaccaatgtccaatcctcaacttccaccaccacactctgtaacttcattcgct
ggcagcgtaagcagtgcagaagatgatcacaagaaagctgcagctgcagttgctgcaaag
ctggccgcatcatcatcatcggcgcaggttctatcttctatcctgtcgtctttggctgca
gaggaagctgcttccatgggcaacagcctgaattcccaagtcctctctgatggccaagct
gctttccctttggagaagaaaccccggctcgagaagctgatttccacgcccgatatgggc
atacattcctactttagccaggcgcagccgcaacagcatcagtcaattccatttcaatcc
cagagcattcaggcacctccaacatttacaccgccactgccgcctctccctccactgccg
ccgccatcactgcagcaatgtgcacaaacaaacggggtaacaaacatgggaccttttcca
tttccaggcagttcagtgccgcctccaccgctatcccacgcatcactggggttcacaaga
cctattatcccacctatacctccgccaccgccgccaccacagcagcaccagcaatcaacc
tcgatgggcttctaccaatctccaggtgttgggttctatggtcagccacagacagctcca
actgtccaaccgcagtga
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