Zingiber officinale (ginger): 121971808
Help
Entry
121971808 CDS
T08725
Name
(RefSeq) protein CHROMATIN REMODELING 5-like
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
121971808
03036 Chromosome and associated proteins [BR:
zof03036
]
121971808
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
121971808
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
121971808
SLIK complex
121971808
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HTH_Hrp3
Chromo
CHD1-like_C
HDA2-3
ResIII
DEAD
Chromo_MIT1
KH_PARP14_5
Motif
Other DBs
NCBI-GeneID:
121971808
NCBI-ProteinID:
XP_042379189
LinkDB
All DBs
Position
4A:complement(155998854..156031819)
Genome browser
AA seq
1721 aa
AA seq
DB search
MAFFGNYNNTITSLHDLNSKEEEEEGATTGDYNSFENRNLDINNKFVDTDLNTDDPNCVE
DFDDAHIAQSENSEGNASVKLGKTAAPHGAWGSKFWKDCQPMSDSEYDRNNIGNEESGRN
SSEDSHEQRHRRLSQRGNVDIPADEMLSDDYYEQDGEEQSDSVHGSGQNHTNISGSRFPL
KPVSVNKKTAKKSRVIKDEEYEDDEDYDEDDEDEDEDDDPDDADFEPESSEIGKGKSKEK
TSESDEFDDDNEEDIDLSDEDDIELFRTQRRGMPRKVGKTSKHKEAKSSINTRRKRARTL
SDDEFSSGKDSEQDSDQAFNQKTSKSSHLHKRARGLSDLAANSNYNSSELRTSGRLVKKV
SYAESEESDDVGEERLNKTQKEDLEEEDGDTIEKVLWHQPKGTVEDAIRNNRSTLPVVAS
TSSDMETDWDAVEFYIKWKGQSYLHCEWKSFADLQNLSGFKKVLNYIKRISEERRHKKVL
SREEIEVHDVSKEMELDLLKQYSQVERIFADRLSKIDGDDMIPEYLVKWQGLSYAEATWE
KDTDIAFAQEAIDEYKAREVAANIQGKLVDFQRKKSKASLRKLDEQPEWLKGGKLRDYQL
EGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLYNAQDIRGPFIVVVPLSTLSNWA
REFRKWLPEMNVVVYVGNRASREICQQHEFFTNKTSGRHIKLDALLTTYEVILKDKAVLS
KIRWNYLMVDEAHRLKNSEASLYTNLSEFNTKNKLLITGTPLQNSVEELWALLHFLDPEK
FSSKDDFVEKYKNLSSFNEIQLANLHKELRPHILRRIIKDVEKSLPPKIERILRVEMSPL
QKQYYKWILERNFHNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDMGTSDI
NKVERIAMSSGKLVILDKLLARLKETNHRVLIFSQMVKMLDILAEYLSLRGFQFQRLDGS
TRADLRHQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSR
AHRIGQQEVVNIYRFVTSRSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKETKKGSSM
FDKHELSAILRFGAEELFKDEKDDEESKKQLETMDIDEILERAEKVESKAADGESGNELL
SAFKVASFCSAEDDVTFWSRLIQPEPLDKNDEALAPRAARNTKSYAEHEQPRKSAKNRKS
GIDTRERTHKRSNKAADMFSHSLPMIEGAAAQVRDWSFGSLPKKDASHFVRAVKRFGNPR
QIDLIVADVGGTVEAAHPEAQIELFDLLIDGCREAVAGGNMDAKSTLLDFFGVPVKAHEL
LNRVEELQLLSKRIGRYKDPVSQFRLVTQHKSPQWSKSCGWNSVDDARLLLGIYYHGYGN
WEKIRLDQRLCLTKKIAPVTLGERETFLPRAPNLDNRASALLQKEFATVNAKSKVKGSRK
IASGPSARIKDVNAKASLSKTNTREKVQVQKHHKVEPQAKEEGEISDSEQERYQQLKEEK
WMEWCADVMEEEEQTLKRLQRLQTTSIDLPKEKVLLRIRKYLQLIGRKIDKIVQQHEVTY
KQARMTMRLWNYVSNFSNLTGERLNEIYSKLKEEPNDGVGPSYLNSSYAAVNSNQFPLNN
DQHRRKKSSQFQSQHSEAFHQNQTAGKSEAWKRRKRPEMDNQFLLQPPSHPSMISNGIRL
GEPMSSAGILGKGPSEMRRYPNDRSTRAHPGRFPPGQGHMS
NT seq
5166 nt
NT seq
+upstream
nt +downstream
nt
atggcattcttcggcaattataataacacaataacttctctacacgacctgaactcgaag
gaggaggaggaggagggtgctactactggtgactataattcctttgagaacaggaatttg
gatatcaataacaagttcgtggacactgacttgaacacagatgatcctaactgtgttgag
gactttgatgatgctcatatagcgcaaagtgaaaactctgaaggaaatgctagtgtgaag
cttggcaaaacagcagctcctcatggtgcatggggttcaaaattttggaaggactgtcaa
ccgatgtctgattctgagtatgatcgtaacaacataggtaatgaagaatctggacgaaac
tcatctgaagactcgcatgaacagagacacaggagactctctcaaagaggaaatgttgat
attccagcagatgaaatgctttctgatgattactatgagcaggatggcgaagaacaaagt
gattctgtacatggcagtggacagaaccacactaacatttcaggttccaggtttccatta
aaacctgtttctgttaacaaaaaaactgcaaagaaatccagagtgataaaggatgaggag
tatgaagatgatgaagattacgatgaagatgatgaagacgaagacgaagatgatgatcca
gatgatgctgattttgaaccagagtccagtgaaatagggaagggaaaaagcaaggaaaaa
acatcagaaagcgatgaatttgatgatgacaacgaagaagatattgatctctcggatgaa
gatgacattgaattgttcagaactcaacgaagaggaatgccacgtaaggttggaaaaacc
tcaaaacataaagaagcaaagtcttctataaatacacgcagaaagagagcgagaacctta
tcagatgatgaattttcatctggaaaagactcagaacaagacagcgatcaagccttcaat
cagaaaacaagtaaatcctctcatttacacaagagagctagaggcctctctgatttggct
gccaattccaactacaatagcagcgagctccgtacatctggcagattggtaaagaaggtc
tcttatgctgaaagtgaagaaagtgatgatgttggtgaggaaagattgaacaagacccaa
aaggaggacttagaggaggaagatggtgatacaattgaaaaggtgctatggcaccaacct
aaaggtacagttgaagatgctataaggaacaacagatcaaccctacctgttgttgccagc
actagttcagatatggaaactgattgggatgctgttgaattttatataaagtggaaagga
cagtcatatcttcattgtgagtggaagtcatttgctgatctccagaatcttagtggattc
aagaaggtgctaaattacataaaaaggatatctgaagaaagaaggcataagaaggtcttg
tcacgtgaggagattgaagttcatgatgttagtaaagaaatggaattggatcttctcaag
cagtacagccaggtagaaaggatatttgctgataggcttagtaagatagatggggatgat
atgataccagagtatttggtgaaatggcaaggactttcgtatgctgaagcaacttgggaa
aaggatactgatattgcatttgctcaagaagcaattgatgaatataaggcccgtgaagtt
gctgcaaatatacaaggaaaactagtagatttccagcgaaaaaagagcaaagctagtctt
cggaaacttgatgagcaacctgaatggctgaagggcggcaaactccgtgattatcagctt
gaaggattgaattttctggttaatagttggagaaatgatacaaatgtcattttagctgat
gaaatgggccttggaaaaaccgttcagtcggtttctatgctaggatttctatataatgct
caggatatccgtgggccttttattgttgttgttcctctctcaacattatcgaactgggca
cgagagttcagaaaatggcttccagaaatgaatgttgttgtgtatgttggaaaccgtgct
agcagagagatctgccaacaacatgagttttttacaaacaaaacaagtggtagacatatc
aagttggatgcactgctaactacttatgaagtgatattaaaggataaagcagtattatct
aaaataagatggaattaccttatggttgatgaggctcacaggttaaaaaatagtgaagct
tcactatacacaaatctctcggaattcaacaccaaaaacaagctccttataactggcaca
ccactgcagaacagcgtggaggagttatgggctcttctgcactttcttgatcctgaaaaa
tttagtagcaaagatgattttgttgagaagtacaagaatctaagctcttttaatgaaatt
cagcttgccaatctccataaagaattgaggccccatattcttcgaagaatcataaaagat
gtggagaagtctttaccaccaaaaattgagcgaatccttagggtggaaatgtctcctctt
cagaagcagtactataaatggattctggaacgtaactttcacaatctgaacaaaggggtt
aggggtaatcaggtttctctattaaatattgtagttgaattgaagaaatgctgcaatcac
cctttcttatttgagagtgccgatcatgggtatggcggagatatgggaactagtgatatt
aataaagttgaacgcattgccatgagcagtgggaagctagtgattcttgacaaattgctg
gctagattgaaagagacaaatcaccgtgttttaatattctcacagatggttaaaatgttg
gacatactggcagagtatttatctcttcggggattccaattccaaaggcttgatggaagt
acaagggctgatcttcgtcatcaagccatggaccacttcaatgctcctggaagtgaggat
ttttgctttctcttgtccacgcgtgccggtggtctaggaatcaatcttgctactgcagac
actgtcattatatttgactctgactggaacccacaaaatgatttgcaggcaatgagtaga
gcacatagaataggacaacaggaagtagtaaatatttatcgatttgttaccagtcgaagt
gttgaagaggacattttggaacgtgccaaaaagaaaatggttttggatcacctggtaatt
cagaagttgaatgctgagggtaggcttgagaagaaagaaacaaagaaaggaagttctatg
tttgataagcatgaactttctgcaattttgaggttcggagctgaagagttgttcaaagac
gagaaagatgatgaagagagcaagaagcaacttgaaaccatggatattgatgaaatttta
gagcgagctgaaaaggttgaatccaaggcggctgatggagagtctgggaatgagttactg
agcgccttcaaggttgccagtttctgcagtgctgaagatgatgtaaccttttggagtcgt
ttgattcaaccagagcctctagataaaaatgatgaagcattggcacctcgagctgctagg
aacaccaagagctatgctgaacatgaacaacctagaaaaagtgcaaagaatagaaagagt
gggattgatactcgagaaagaacacacaagcgctccaacaaagctgcagatatgttttct
cattccctaccaatgattgaaggggcagcagctcaagtaagggattggtcctttggtagt
ttaccaaagaaggatgcttcccattttgtccgagcggtaaaaaggtttggtaatcctcga
caaattgatctcattgttgctgatgttggtggtacagttgaagctgctcatccagaggct
cagattgagctatttgatttactgattgatggttgtagagaagcagtagctggaggaaat
atggatgctaagagtactctcttagatttttttggagtacctgtaaaggcgcatgaattg
ttaaatcgtgttgaagagcttcagcttctgtcaaagcgcattggacgatataaagatcct
gtttctcaatttcgcctggtaactcagcataaaagtccacaatggtccaaaagctgtggt
tggaattctgttgatgatgcaagattgctcctagggatatactatcatggatatggtaat
tgggaaaagataaggttagatcagaggctttgtctcacaaagaaaattgctccagttact
cttggagaacgtgaaacatttttaccccgtgctccaaacttagacaatcgtgctagtgca
cttttgcagaaggaatttgctacagttaatgctaagtcaaaagttaaaggttctcgcaaa
attgcaagtgggcctagtgctcgaataaaagatgttaatgcaaaagctagcctgtctaag
acaaatactagagaaaaagtccaagttcaaaagcaccacaaagtcgaacctcaggctaag
gaggaaggtgaaatatcagattctgagcaggaaaggtaccaacagctaaaggaggaaaaa
tggatggaatggtgtgctgatgtcatggaggaggaggagcaaactttaaaacgtctacag
aggttacagacgaccagtatagatcttcccaaggagaaggttctcttgagaattagaaaa
tatctccaattaattggaaggaagattgacaagattgttcagcaacatgaagtaacatac
aagcaggcccgaatgacaatgagattatggaattacgtgtccaacttttccaatttgact
ggagagaggttgaatgagatctattcgaagttaaaagaggagccaaatgatggtgttgga
ccatcctaccttaacagtagttatgcagctgtcaacagtaatcagttccctcttaataac
gatcaacatagaaggaagaaatcatcccaattccaatcccaacattcagaagcctttcac
cagaatcaaactgctggaaagtcagaagcatggaaacgccgaaaaagacctgaaatggat
aatcagtttctacttcagcccccgtcgcatccatccatgataagcaatggtatccggcta
ggtgagccaatgagttctgcaggaattctaggtaaaggaccatcagaaatgaggagatat
ccaaatgatagatctactagggcacatcctggccgtttccctccaggtcaaggtcacatg
tcatag
DBGET
integrated database retrieval system
