Zingiber officinale (ginger): 121971855
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Entry
121971855 CDS
T08725
Name
(RefSeq) guanine nucleotide exchange factor SPIKE 1-like
KO
K21852
dedicator of cytokinesis protein 6/7/8
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zof04131
]
121971855
Membrane trafficking [BR:
zof04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
121971855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHR-2_Lobe_A
DOCK-C2
DHR-2_Lobe_C
DHR-2_Lobe_B
Motif
Other DBs
NCBI-GeneID:
121971855
NCBI-ProteinID:
XP_042379260
LinkDB
All DBs
Position
4A:complement(157224957..157330975)
Genome browser
AA seq
1853 aa
AA seq
DB search
MLMAELHIMEDYTSSSGYRFKRIQHRLCASNSELEPLLNENIDQWPHLNELLQCYKADWE
VDENKYGHYESVAPSSFQNQIFEGPDTDMETEMHLASERLPKNDNVTCDDVPSTSGRQMS
EVSLHKSSFNCQDMHFGESPLPPYEPTFDWENERSLIVGQRTPETLPTHTSRLKITVKVM
SLSFQAGLIEPFYGTICLYNRDRKEKLSEDFHFCILPTEGQDGNTSLLRRAVFSLDAPSM
SICLLIQLEKTATEEGGVTASVYSHKEPIHMTEREKQKLQVWSRIMPCRQSFAWTIIPLF
EGNNCTAIGGSASPSSPLTPNASGPTSLDTFAEHVSKIALDGKQAQNLTGDSVIMEISNL
NMVKESYTEDLFLDPKRKVHKPVKGVLKLEVEKLHITLVDADYISEGGGRIIDSNDIGDR
FTETSLRKHHNHDILGNGSLKFIGTNRINIHRNVLTPSGEDHLNFSDDLEVFDFRRMTRS
EPFSQLFHCLYVYPLTVSLSRKRNLFIRIEMRKDDADIQKQPLEAVFPKDQGHTFENNAH
TQIAFGARMACYHDEVKLCLPAILTSQHHLLFTFFHVDLQMKLEAPKPVIIGYSALPLTS
HIQLFSDVSLPILRELVPHYLQVNSKEGFDFLEDGKNVFKLRLRLCSSLIPVNERIRDFF
LEYDRHNLRTSPPWGSELLEAINSFKNVDSTALLQFLHPILNLLLRLIGDGGETLQVAAF
RAMVNILTRVQQESSDGADRNSFLVKYVDYAFNDFGGRQAPVYAGLSTVWGSLARSKAKG
YRVGPVYDDVLAMAWFFLELIVKSMALEQSRLVYHSLPSGEDVPPLQLKEGVFRCIIQLY
DCLLTEVHERCKKGLSFAKLLNSSLAFFCYDLLSIIEPRQVFELVSLYIDKFAGVCQSIL
HDCKLTFLQIICDHDLFVEMPGRDPSDRNYLSSVLIQEIFLTLDHDDLLQRAKAARILVV
LMCKHEFDSRYQKLEDKLYIAQLYFPLIGQILDEMPVFYNLNAIEKREVLIVILQIIRNL
DDPSLVKAWQQSIARTRLFFKLLEECLIHFEHKKPTDNMLLGCSSRLPDNEGHDSPKYSD
SLSPAINTYLSEASRQEFRGTPENGYLWHKVSPQLSSSNQPYSLREALAQAQSSRIGATT
RALRESLHPILRQKLEVWEENLSTAVSLQVLEITNKFSVAAASQSIATDYGKLDCITSMM
IGLFSRSQPLAFWKAFFSVFNNIFSVHGATLMARENDRFMKQVAFHLLRLAVFRNDSIRK
RAVLGLQILIRNSFYYFTNTTRLRVMLTITLSELMSDIQVAQMKPNGNLEESGEAWRLRK
SLEEMADQRLNVQLINDCGLPGNALEAFPENSTDNLWSWSEVKYLSGSLLLALDAALEHA
VLASVMTVDRYAAAESYHKLAMAYASVPDLHIMWLLHLCDAHQEMQSWAEAAQCAVAVAS
VILQALVGRNDAVWNREHVASLSKICPMVSNAVASDSSAAEVEGYGASKLTVDSAVKYLQ
LANKLFSQAELYHFCANILELIIPVYKSRRAYGQLAKCHTSLSSIYDSILEQESSPITFI
DATYYRVGFYGTWFGKLDRKEYVYREPRDVRLGDIMEKLSHIYESKIVGSHTLHIIPDSR
QVNAEELQPDVCYLQITAVDPVMEDEDLESRRERIFSLSTGSLRTQVFDRFLFDTPFTKN
GKTQGGLEDQWKRRTVLQTEGSFPALVNRLLVVKSESLEFSPVENAIGMIETRTAALRNE
LEEPRSSESDQLPRLQSLQRILQGSVAVQVNSGVLSVCKAFLSGEPATRLRSQELQQLIA
ALLEFMAVCKRAIRVHFRLIGEEDQDFHTQLVNGFQSLTAELSHYIPAILSEL
NT seq
5562 nt
NT seq
+upstream
nt +downstream
nt
atgttgatggcagaacttcatataatggaagattacacatcaagcagtggttatcgtttt
aaaaggatacaacaccggctgtgtgcttctaattcagagttggagccattgctaaatgaa
aatatcgaccaatggccacatcttaatgagttgttacagtgctacaaagctgattgggag
gtggatgaaaacaaatatggacattatgaaagtgttgcaccatcatcttttcaaaatcaa
atatttgaagggcctgacactgatatggaaactgagatgcaccttgccagtgaaagactt
cccaagaatgacaatgttacttgtgatgatgtccctagtacttcaggcagacaaatgtct
gaagtcagcttacataagtcatccttcaattgtcaggacatgcattttggtgaatctcct
ctcccaccttatgaaccaacttttgactgggaaaatgaaaggtcactaatagttggccaa
agaactcctgaaactcttccaacccataccagtagattgaagataactgtaaaggtgatg
tcattatcattccaagctggactgattgagcccttttatggcacaatttgtttatataac
agagacaggaaagaaaaattgtctgaggactttcacttctgtattttgccaactgaagga
caggatggtaacacttccttgttacgtcgtgctgttttctccttggatgcaccatcgatg
tcaatttgcctacttattcaacttgagaagacagctaccgaggaagggggagttacagct
tctgtttattctcataaggaacctattcatatgactgagagagaaaagcagaagctccaa
gtttggtcaagaatcatgccttgtcgacaatcatttgcatggacaattattccgttgttt
gaaggcaacaattgcactgccattggtggttctgcatctcctagtagtcctcttactcca
aatgcatcaggcccaacctctctagatacttttgctgaacatgtttcaaaaattgctttg
gatgggaaacaggctcaaaatttaactggagactctgtgattatggagatatcaaattta
aacatggtcaaagagagctatacagaggatttatttctggatcctaaaagaaaggtacat
aagcctgtgaaaggtgtactgaaattggaggttgaaaagcttcatattacacttgttgat
gcggactatatctctgaaggtggaggcagaatcatagactcaaatgatattggtgatcgt
ttcactgaaacttctttaagaaaacatcacaatcatgatatcctggggaatggtagtttg
aagttcattggcaccaatcgaataaatattcataggaatgtgttaactccatctggagaa
gatcatctgaacttcagtgatgatttagaagtttttgatttccggaggatgactagaagt
gagccattctcacaactgttccattgtctttatgtttatcctttaactgttagcttgagt
cgcaaaagaaatttgttcattaggatagaaatgagaaaggatgatgctgacattcaaaag
cagccactagaggctgtgtttccaaaggaccaaggccatacttttgaaaacaatgctcat
acgcaaattgcgtttggggctagaatggcttgctatcatgatgaagttaaactttgcctc
cctgctattttgacatcccagcaccatctcttgtttaccttttttcatgtcgatcttcaa
atgaaactcgaagctcccaagcctgtgattattggttattctgcacttcctttgacttcc
catattcagctgttctctgacgtatctttacctattttaagagagctggttcctcattat
ctccaagtaaatagcaaggagggatttgactttctagaggatggaaaaaatgttttcaaa
ttacgcttgaggttgtgctcttctttgattcctgttaatgaacgaatccgtgattttttt
cttgagtatgaccggcataatcttcggacaagtccaccttggggatcagaacttctcgag
gcaattaacagcttcaagaatgttgattccactgccttattacaatttctccatccaata
cttaatttgctcctccgtcttattggtgatggtggtgaaactctgcaggtcgcagcattt
cgtgctatggtcaacattctaaccagagtacaacaagagtcatctgatggagcagataga
aatagttttctagtgaaatatgttgactatgcatttaatgattttggtggtcggcaagca
cctgtttatgctggtttgtctacagtatggggtagcttggcacgtagtaaggccaagggc
tatagggttgggcctgtctatgatgatgtgttggcaatggcatggttcttcttggagttg
attgtgaaatcaatggccttagaacaaagtcgtctggtctaccacagtcttccttcaggt
gaagatgtaccacccttgcagttaaaggaaggtgtttttcggtgtatcatacagctttat
gattgcctcctgacagaggtccatgaacgttgcaaaaagggtttaagctttgcaaaactc
ttgaatagtagtctggctttcttttgttatgacttgttgtccataattgagccacgccaa
gtttttgaactggtttcattatatattgacaaatttgctggtgtttgccaatcaattttg
catgattgcaagctgacatttttgcaaattatatgtgatcatgatctctttgtggaaatg
cctgggagagatccttcggacagaaattatctttcatcagttctaatccaggaaatattc
cttaccctggatcatgatgatttattacaacgggcaaaagcagctcggatcttagtggtt
ctcatgtgtaagcatgagtttgattcccgttaccaaaaactggaggataagttatatatt
gcccagctgtatttccctcttattggccagatattggatgagatgccggtgttctataat
ttaaatgccattgaaaaacgtgaagttttaattgtgatattgcaaatcataaggaacttg
gatgatccatcacttgttaaagcatggcaacaaagtattgcacgaaccagattattcttt
aaactccttgaagagtgtcttattcattttgagcacaaaaaaccaacagataacatgtta
ctgggatgtagctcacgtctccctgacaatgaaggacatgattctccaaagtactctgat
tctctttcgccagcaattaatacatatttatctgaagcatctcgtcaagaatttagagga
acacctgaaaatggatatctgtggcacaaagtcagtcctcagttaagttcatctaaccaa
ccatattctttaagggaagctcttgcacaagcacagtcttctagaattggagcaacaact
agagctttgcgagagtctcttcatcctatactgaggcaaaaattggaagtttgggaagaa
aatttgagcacagcagtcagtcttcaggttcttgagattaccaacaagttctcggttgct
gcagcatctcaaagtattgctactgactatgggaaactagattgcatcacatccatgatg
ataggtcttttctcccggagtcaaccattggctttttggaaggccttcttttctgtgttt
aacaatatattcagtgttcatggagcaacactgatggcaagagagaatgatcgcttcatg
aagcaagtagcatttcatcttttgcgccttgcagtttttcgtaatgattccatcaggaaa
agagctgtgcttggactacagatacttatcaggaattcattttactatttcacaaatacg
acacgattgagagttatgctgacaattaccttgtcagagttgatgtctgatattcaagtg
gctcagatgaagcctaatggaaatctcgaagagagtggtgaagcatggcgtcttaggaaa
tcattggaggaaatggcagatcaaaggttgaatgtgcaacttataaatgattgtggacta
cctggaaatgcacttgaggcatttcctgaaaattcaacagataatctttggtcctggtca
gaggtcaaatatctatcaggcagtcttcttctggcccttgatgcagccctcgaacatgca
gttttggcttctgttatgactgtagatagatatgcagctgctgaaagctatcataagctt
gcgatggcttatgcatctgttcccgatcttcacattatgtggttgctgcatctatgtgat
gctcatcaggagatgcaatcatgggcggaagcagctcaatgtgcagtagctgtagctagt
gtcattttgcaggcccttgtcgggaggaacgatgcagtttggaatagagaacatgtagct
tctttgtctaagatttgccctatggttagcaatgcagttgcctccgattcatctgcagcc
gaggtggaaggatatggtgcatcaaaactcactgtggattccgcagttaaataccttcag
cttgctaacaagcttttctcacaggcagagctttaccatttttgtgccaacattttggaa
ctcataatcccagtctataaaagcaggagggcttatggtcaacttgccaagtgtcacaca
tccctttccagtatctatgattcaatactcgagcaggaatcaagccccataacatttata
gatgccacctactaccgagttggattttatggaacttggtttgggaagctggacagaaag
gagtatgtgtatcgggagccacgagatgttcgtctaggtgacataatggagaaacttagt
cacatatatgagtccaaaattgttggaagccataccctgcatattataccagattctaga
caagtcaatgccgaagaattgcaacctgatgtctgttatctacaaattacagctgtggat
cctgttatggaggatgaggacctcgagagtagaagggagagaatattttctctgtctact
ggaagtctgcgaacccaagtttttgacaggttcttgtttgataccccatttactaaaaat
gggaagacacaaggaggcctagaggatcaatggaaaagacgaacagtgctccaaactgag
ggttcctttcctgctttggtgaataggcttttggttgttaagtctgaatccttggagttc
tctccagtagaaaatgctattggaatgatagaaaccaggacagctgcactaagaaatgag
ctagaagagccacgtagctcagaaagcgaccaactcccacggctccaaagtctacagagg
atactccaaggaagtgttgcagtgcaggtgaacagtggagtccttagtgtatgcaaagct
tttttgtcaggtgagcctgccacgaggctccgatcacaagaattgcagcaactaattgcg
gcccttcttgaatttatggccgtttgcaaacgggcaatccgagtacattttagactgatt
ggcgaagaagatcaagacttccacacgcagcttgtaaatgggttccagtcccttacagct
gagctatcacactacattcctgccatcctttctgaactttga
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integrated database retrieval system
