Zingiber officinale (ginger): 121972014
Help
Entry
121972014 CDS
T08725
Name
(RefSeq) tRNA pseudouridine synthase A 1-like isoform X1
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
zof03016
]
121972014
Enzymes [BR:
zof01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
121972014
Transfer RNA biogenesis [BR:
zof03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
121972014
Prokaryotic type
121972014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
121972014
NCBI-ProteinID:
XP_042379523
LinkDB
All DBs
Position
4A:160837779..160839760
Genome browser
AA seq
349 aa
AA seq
DB search
MVFAAVASAAASPLPAFSLTKSPCMSDGLAKEHTQSAMVSLPSSHKWRMVIAYDGTKFAG
WQYQQSPPTIQCLIEDALTRATKLCRKELCLVGASRTDAGVHAWGQVAHFVTPFMFDSLD
TLHAALNGLLPQEIRVREISPVQPQFHARFSTTSKTYHYKIYNHAIMDPFRCLFAYHSTY
KLNPVVMREAAAYFVGKHDFTSFANAAHNDRLGNPVKEIFCLDIVETVINYAQCKQSTIS
RKYTSKLHLQGAVLQLEVEGSGFLFRQVRNMVALLLQIGREALPADVVPQIISARDRKEL
AKVALSAPPHGLCLMSVNYNSDILEPPQGCPPSSFGRTHSVSKCKLPFY
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atggtcttcgcggccgtggcctcggccgccgcctctcctcttccggcgttctctctgacg
aaaagcccgtgcatgagcgatggcttggcgaaggaacacactcagtcggcaatggtgtcg
cttccttcctctcacaagtggcgcatggtcatcgcctacgacggcaccaagttcgctggc
tggcaatatcagcagtcaccaccaacaatacaatgtctcattgaagatgccttgacacgc
gctacaaagctctgtcgaaaagaactttgcttggttggtgcgagcaggactgatgctggt
gtccatgcttggggccaggttgctcacttcgtcacacctttcatgtttgatagcttggat
actcttcacgctgctttgaatggccttctgcctcaagaaatcagagtgagagaaattagt
ccagtccaaccccagtttcatgctcgtttctctacaacgagcaagacatatcactacaag
atatacaatcatgcgataatggatccttttcggtgtctttttgcctaccacagtacttat
aagctcaatccagttgtcatgagggaagctgccgcatattttgttggaaaacatgacttt
acctcttttgccaatgcagcacacaatgatcggctgggaaatccagtgaaagaaattttt
tgtttagatatcgttgaaacggtaatcaattacgcccaatgcaaacaatcaactatttcg
aggaaatatacaagcaaattgcatttgcagggtgccgttttgcagcttgaggttgagggt
tctggattcttattcagacaagtgcgcaacatggtagctttgctgcttcaaattggaaga
gaagcacttcctgcagacgtcgttccacaaataatctcggctcgagaccgcaaagaactt
gcgaaagtggctttatcagctccaccacatggtctatgtctcatgtctgtgaactataac
agtgacatcttagaacctcctcaaggttgcccaccaagtagcttcggcagaactcattca
gtgagcaaatgtaagcttccattttattga
DBGET
integrated database retrieval system
