KEGG   Zingiber officinale (ginger): 121972196
Entry
121972196         CDS       T08725                                 
Name
(RefSeq) COMPASS-like H3K4 histone methylase component WDR5A
  KO
K14963  COMPASS component SWD3
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    121972196
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:zof03036]
    121972196
Chromosome and associated proteins [BR:zof03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    ATAC complex
     121972196
    NSL complex
     121972196
   HMT complexes
    COMPASS/SET1 complex
     121972196
    COMPASS/SET1 complex (yeast)
     121972196
    MLL-HCF complex
     121972196
    MLL3/MLL4 complex
     121972196
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     121972196
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_EML_2 EIF3I WD40_MABP1-WDR62_1st WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_WDR75_1st NBCH_WD40 WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_IFT122_1st Beta-prop_DCAF4 Beta-prop_EIPR1 Beta-prop_SCAP Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_NWD2_C Beta-prop_Vps41 WD40_like Beta-prop_WDR19_1st Beta-prop_Nup120_160 Beta-prop_IFT140_1st Beta-prop_HPS5 eIF2A Beta-prop_SPT8 Beta-prop_WDR35_TULP_N Beta-prop_WDR75_2nd PROPPIN RMC1_N Ge1_WD40 WDR54 Beta-prop_NUP159_NUP214 Beta-prop_DCAF12 VID27 Cytochrom_D1 Beta-prop_VPS8 Nbas_N Beta-prop_NOL10_N VPS8_N DUF5570 DUF5888 Beta-prop_LRRK2 PALB2_WD40 Mala_s_1-like
Other DBs
NCBI-GeneID: 121972196
NCBI-ProteinID: XP_042379819
LinkDB
Position
4A:163307693..163312070
AA seq 326 aa
MPDVASAAVSINDATAHSPRYNLHTTLEGHERAVSSVKFSPDGTLLASASADKTIRVWSA
PDFSLRAELSGHDEGISDVSFSTDGRYLCSASDDRTVRIWDLAASTTVKTLSGHTNYVLC
CSFNPHSNMIASGSYDETVRVWEFKSGKCLRVLPAHSEPVTAVDFNRDGSLIVSSSNDGL
CRIWDSATGHCMKTLIDDESPPVSFVKFSPNGKFVLAATLDSTLRLWNFSAGKFVKTYSG
HVNSKFCIPAIFSITNGNYVVSGSEDNCVYLWDLQNRKIVQKLEGHTDSVIAVSCHPSEN
IIASGALGNDKTVKIWVQKNEDQLED
NT seq 981 nt   +upstreamnt  +downstreamnt
atgccggacgtcgcctccgctgcggtatccatcaacgatgccaccgcgcatagcccacgc
tacaaccttcataccactctcgagggccacgagcgcgccgtatcttccgtcaagttctcc
cccgacggcacactcctcgcctccgcctcggccgacaaaaccatccgcgtgtggtccgcc
cccgacttctccctccgtgcggagctctccggacacgacgagggcatctccgacgtatcg
ttctcaacggacggccgctatctctgctccgcttccgacgatcgcactgtccgcatctgg
gatctcgccgcgtccaccaccgtcaagaccctctccggacacaccaactacgtgttatgt
tgttccttcaatccgcactctaacatgatcgcctccggctcctatgacgagactgttcgg
gtctgggagttcaaatctggcaagtgcctacgcgtcctccctgctcactcggagcccgtg
accgccgtcgactttaatcgtgacgggagccttattgtctcaagtagcaatgacgggcta
tgccggatttgggactctgcgaccgggcattgcatgaaaacccttattgacgacgagagt
cctccggtttcatttgtgaaattctctccgaacgggaagtttgttctggcagcgaccctc
gatagcacgttgaggctctggaacttttctgctggtaaatttgtgaagacatattccgga
catgttaattcaaagttctgcattcctgcaattttttctatcacaaacgggaattatgtt
gtgagtggttcagaagacaactgtgtgtatttatgggacctccagaatagaaaaattgtg
caaaaattggaaggccatacagacagtgttattgcagtatcatgccacccatctgaaaac
atcattgcttctggggcacttggtaatgataagacagtgaagatatgggttcagaaaaat
gaggatcaattggaagactga

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