KEGG   Zingiber officinale (ginger): 121972361
Entry
121972361         CDS       T08725                                 
Name
(RefSeq) UBP1-associated protein 2B-like
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    121972361
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zof03019]
    121972361
   03041 Spliceosome [BR:zof03041]
    121972361
Messenger RNA biogenesis [BR:zof03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     121972361
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     121972361
Spliceosome [BR:zof03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    121972361
SSDB
Motif
Pfam: RRM_1 RRM_7 Collagen
Other DBs
NCBI-GeneID: 121972361
NCBI-ProteinID: XP_042379977
LinkDB
Position
1B:complement(111797935..111807896)
AA seq 467 aa
MATKKRKVDQEGELLSAASDPLPPPVLYTPALASDEEDADGDDDEVGNFLETFSRDQLVT
LLSFAAESDGATLAEIRRTADLDPSHRKLFVHGLDWETTAEGLRSAFARYGDIDDCRVIF
DKVSGRSKGYGFVLFCHRSSARRALRRPQKLIDSRMASCQLASSGPAPNPQNSAQNHSNF
NTGPSVATYQDNVARKIYVGNVNCDVDGGRLLAFFSQYGEIEEGPIGFDRHTGKPKGYAL
FVYRTVDGAMRALEEPNKNFEGIVLQCERGNDRSKGTQYHNAAAPLNVAPSTGTLSGPGY
TMPVADTGLAQQAAMMGQGLLGMGGAQAFGQAMQSNAAMLALLTAAGQNPAAFGITPNVL
SSLNPAFATAFGATGSQQTAPTLPQMAQVPNYGVVNSGYQGSAGFQGSAGFQGSPGFQGP
PGFQGPPGYQSNQSVAQQAPGGGSSYPTGATPMSRRSTGSMGGYGQF
NT seq 1404 nt   +upstreamnt  +downstreamnt
atggctaccaagaagcgcaaggtcgaccaagagggcgagctcctctccgccgcctcggat
ccccttccgccgcccgtcctctacacccctgctctcgcctccgacgaggaggacgccgac
ggcgatgatgacgaagtgggtaattttctggagacgttctcccgtgaccagctcgttacc
ctcctcagcttcgctgcggaatccgatggcgctaccctggccgagatccgccgcaccgct
gacctagatccctcgcaccgcaagctctttgtccacgggctcgactgggaaaccaccgcc
gagggccttcgctccgcgtttgcccgctacggagacattgatgactgccgcgtcatcttt
gacaaggtcagtggccgatccaagggatatggttttgttctattctgtcaccggagctcc
gcacgccgcgccctccgccgcccgcagaagctaattgacagccgcatggcctcctgccaa
ctcgcatcttctggccccgcgcccaatccccaaaattctgcccagaaccactcgaacttt
aacactggccctagtgttgccacttatcaggataacgtcgcgaggaagatctatgtagga
aacgttaattgtgacgtcgatggtggccgtctccttgcctttttctcccagtatggtgag
atcgaggagggccctattggctttgatcggcatacagggaagcccaaaggctacgcttta
tttgtctataggacggtggatggcgccatgagagccctcgaggagccaaataagaatttt
gagggaatagttcttcaatgtgagagaggtaatgacagaagtaaggggacacaatatcat
aatgcagcagctccactcaatgtagcaccgagtacaggaactctgagtggtcctggttat
actatgcctgtagcagacactgggttagcacaacaagctgcaatgatggggcagggtctt
cttggcatgggcggggcacaagcgtttgggcaggctatgcaatcaaatgctgcaatgctt
gctctactgacagctgctgggcagaatccagcagcttttggaatcacacctaatgtgctt
agttctttgaaccctgcttttgcaactgcttttggtgcaacagggagccagcagacggca
cccactttacctcagatggcacaggtgccaaactatggggtcgtaaattctgggtatcag
ggatctgcaggttttcagggatctgcaggctttcagggttcaccagggtttcaagggcct
ccagggtttcagggtcctccaggctatcagagcaatcagtctgtcgctcaacaagcaccc
ggaggtggcagctcttacccaacaggggcaactccaatgtcaaggcgatcgactggatca
atgggcggatatggacaattttag

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