Zingiber officinale (ginger): 121973214
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Entry
121973214 CDS
T08725
Name
(RefSeq) guanine nucleotide exchange factor subunit RIC1-like
KO
K20476
RAB6A-GEF complex partner protein 1
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zof04131
]
121973214
Membrane trafficking [BR:
zof04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Rab associated proteins
121973214
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RIC1_2nd
RIC1
Beta-prop_IFT122_1st
Beta-prop_EML_2
Beta-prop_THOC3
WD40_CDC20-Fz
ANAPC4_WD40
Beta-prop_VPS8
WD40_Prp19
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR3_1st
Beta-prop_RIG_2nd
Beta-prop_NOL10_N
Beta-prop_RSE1_2nd
DUF7165
Motif
Other DBs
NCBI-GeneID:
121973214
NCBI-ProteinID:
XP_042380712
LinkDB
All DBs
Position
1B:113559562..113578159
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AA seq
1125 aa
AA seq
DB search
MYMAYGWPQAIPIESDASTSSSPSDRVVYLKAINRLLLVVSSTHLELWSVSQHKVRLGKY
FRDADSVEREGENLQAIWSSDTKSIAVLTSSSYLHIYKIHFSGKRLVIGGKQTPGPVLAN
ILLVIIEKAPFSEKNLVTCNFVCDSKNMLLGLSDGQIQLVSWNGEFPSSFRLCCQPPHAV
PDVSSTALIEATSVQESTQCCPRSSAIIQLELSSQLRLLVVLFSSCQIALCSISKKGLKQ
TQSIKAERWFNTEDAVCASVASDQQILAVGCSRGVVELYDLAENATLLRTISLYDWGYSK
EDTGPVSCIAWTPDNCALAVGWKFRGVTVWSASGCRLMCTIRQTGLGSVSSPMVKPNQDL
KFEPLFGGTSQVHWDEFGYKLYAIEERPLERILAFSFGKCCLNRGLSGTSYARQIIYGDD
RVLIIQPDDTEELKIMHLNLPVSYISQNWPVLHVVASKDGMYLAVAGVHGLILYDLRFKK
WRVFGDVTQEQKIECKGLLWLGKIIVVCNYIESSNTYELLFYPRYHLDQSSLLYRKTLLG
KPIVMDVLQDYILVTYRPFDVHIFHVKISGELSPSSTPILQLSTVRELSIMTAKSHPASM
RFIPEFTAENTSEKNNSQQPSRCLILRANGELSVIDLDDGHEQLLSNSVELFWVTGGHFE
EKSNLIEEVSWLDYGHQGMQVWYPSPGVDPFIQEDFLQLDPELEFDREVYPLGLLPNIGV
VVGVSQRMSFSACSEFPCFEPSPQAQTILHCLLRHLLQRGKNEEALRLACLSAEKPHFSH
CLEWLLFTVFDAEISRQNATKDQLSSGMSSSGNSLLDKTCRLIKNFPEYLEVVVSVARKT
DGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQYCALRLLQATLD
ESLYELAGELVRFLLRSGREYENLATESDTLSPKFLGYFLFRSTSHKQSSDLRSNSFKEL
SPHIASVKNILESHATHLMSGKELSKLVAFVKGTQFDLVEYLQRERQGSARLENFASGLE
LIGQKLQMDTLQSRLDAEFLLAHMCSVKFKEWIVVLATLLRRAEVLVDLFRYDLRLWNAY
SRTLQSHAAFHDYLDLLNMLEEQLASLSNLKLQNGSAAVSDPSSS
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgtacatggcctacggatggccgcaggccatccccattgagagtgacgcatccacctcc
tcttccccctccgatcgggtcgtctacctcaaggccatcaatcgcctcctcctcgttgtc
tcctccactcacctcgagctctggagcgtctcccagcacaaggtgagattgggcaagtac
ttcagggacgccgactcggtcgaaagagagggagagaatctccaagcgatttggagctct
gataccaagtcgatcgcggttcttacttcttcatcatatttacatatttataaaatccac
ttttctggaaaaagacttgtgattggtggcaagcaaacacctggaccagttcttgctaat
atcttgctggttatcattgaaaaggcacccttttcagagaaaaatttagtaacttgcaat
tttgtatgtgatagcaaaaacatgctccttggactttctgatgggcaaatacaacttgtc
tcatggaatggggagttccctagtagcttcagactttgttgccaaccaccacatgctgta
ccagatgtatcttcaactgctcttatagaggcgactagtgttcaagagtctactcagtgc
tgtcctagaagttcagctattatccagctagagttatcatcacaactgagattgctggta
gttttgttctccagttgccaaatcgctctttgttctataagtaagaaaggattaaagcaa
acacagtctattaaagctgagagatggttcaatacagaggatgcagtgtgtgcttctgta
gcttctgatcagcagatccttgcagtaggatgtagtagaggtgttgtggagttatatgac
ctggcagagaatgcaacacttctacgaacaatatcattgtatgactgggggtactctaag
gaggatacaggtcctgtatcttgtatagcttggacaccagataattgtgcattagcagtg
ggatggaagtttagaggggttacagtttggtccgcatctggctgccgtcttatgtgcacg
attcgtcaaactggattgggttcagtttcatctcctatggttaagcctaatcaggacttg
aaattcgaacctttatttggtggcacctcacaagttcactgggatgagtttggatacaaa
ctttatgcaattgaagaaagaccattggagaggattttagctttttcatttggaaaatgc
tgccttaatagagggctttcaggcacttcatatgctcggcagattatatacggggatgat
agagttctcatcatacagccagatgatacggaagaacttaaaattatgcaccttaatcta
ccagtgtcttatatatctcaaaattggcctgttctacatgttgttgctagcaaagatggt
atgtacttggcagttgcaggtgttcatggtctcatcctctatgatttgcgtttcaaaaaa
tggcgtgtctttggagatgtcactcaagagcagaaaattgagtgcaaaggcttgttatgg
cttggcaagattattgtcgtgtgtaactatattgaatcttccaacacgtatgagttgttg
ttttatccaagatatcatcttgatcagagctctttactttatcgaaagacgttacttggg
aaaccaattgtcatggatgtgctccaagactatatacttgttacttatcgtccatttgat
gttcatatttttcatgtgaagatttcaggagaactatcaccttctagtactccaattctt
cagctttctacagtaagggagctttccattatgaccgcaaagagccatcctgcatcaatg
agattcattcctgagttcacagcagaaaatacatcagaaaagaacaattctcaacaaccc
tcaagatgtttaatactgcgggcaaatggggaactttcagttattgatttggatgatgga
catgagcagttgctatctaattcagttgaactattttgggttactggtggccattttgaa
gagaagtcaaacctcattgaggaagtttcctggctagactatggccatcaaggaatgcag
gtttggtatccatcacctggagtagatcctttcatacaggaggattttttgcagctggat
cctgaacttgaatttgatcgagaggtttatccattgggccttcttccaaacataggggtt
gtggttggtgtgtctcagaggatgtcattttcagcctgctcagagttcccatgctttgag
ccttcacctcaagctcaaaccattttgcattgtctcctacgccatcttcttcagaggggc
aaaaatgaagaagcattgcgcttggcatgcctttcagcagaaaaacctcacttttcacac
tgcctagagtggcttctctttactgtatttgatgctgagatatccaggcaaaatgcaacc
aaggatcagttatcctcagggatgtcatcttcaggcaattcactcttagataagacatgc
agattaataaagaattttccagaatatttggaagttgttgttagtgttgcacggaaaaca
gatggtcgccattgggctgatttattctctgctgctggaagatcaactgagttgtttgaa
gagtgcttccaacgaagatggtacaggacagctgcttgctatatactggttatagctaaa
ttagaaggtcctgctgtgagccagtactgtgcccttcgcctacttcaagcaacacttgat
gagtctttgtatgaacttgctggtgaattggtacggttcttgcttagatctggaagagag
tatgaaaatttggctacagaatctgacacgctgtctcctaaatttctgggctattttctt
tttcgctcgacatcccacaagcaatcatctgacttgagaagcaactcattcaaagagctt
agcccacatattgcatctgttaagaatattttagagagccatgccacccatttgatgtct
ggaaaggaactttcgaagcttgtagcattcgttaagggtacacaatttgatcttgtggaa
tatcttcagcgggaaagacaaggcagtgctcgcttggagaattttgcatcaggtcttgaa
ctaattgggcaaaagctccaaatggatactctccaaagccgattggacgccgaatttctt
ttggcacatatgtgctctgtcaaatttaaggagtggattgtagttcttgctactctactg
aggcgtgcagaggttcttgtcgatcttttccgctatgacttgcgcttgtggaatgcctac
agccggacactccagtcacatgctgcattccatgattaccttgatctcctcaacatgttg
gaagagcaacttgcttcgttgtcaaatctgaaactgcagaatgggtctgctgcggtgtct
gatccatcatcaagttaa
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