Zingiber officinale (ginger): 121974457
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Entry
121974457 CDS
T08725
Name
(RefSeq) cleavage stimulation factor subunit 77-like isoform X1
KO
K14408
cleavage stimulation factor subunit 3
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121974457
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
121974457
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
121974457
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
TPR_19
TPR_15
TPR_2
Iml2-TPR_39
TPR_16
Motif
Other DBs
NCBI-GeneID:
121974457
NCBI-ProteinID:
XP_042381453
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Position
4B:complement(3576048..3604373)
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AA seq
763 aa
AA seq
DB search
MSEEPKKGDDGTTTDIYNVEAAEILANEAQLLSIAEATPIYEQLLSTFPTAAKYWKQYVE
AYITTHNDEVTKQIFSRCLLNCLQISLWRCYINFIRKVNEKKGTEGLEETRKAFDFMLNY
VGYDISSGPVWLEYIAFLKSLPVTTAQEESHRMANLRKVYQRAIVTPTHHVEQLWKDYEN
FENSVNRTAAKGLVSEYQPKFNSARAVYKERKKYLDEIDWNMLAIPPNGSYKEEQQCMAW
KRLLVFERGNPQRVDSASANRRITFCFEQCLMYLYHYPDIWYDYATWHASSGSVDSAAKV
FQRALKALPDSELLKYAYAELEESRGAIQSAKKIYESFLVSNSGATSLAQIQYIRFLRRS
EGIEAARKYFLDARKSPSCTYHVFVAYATVVFCVDKDSKVAHNIFEAGLKRFMNEPGYIL
EYADFLCRLNDDRNVRALFERALSSLPPEKSVEVWKGFSKFEQTYGDLVSMLKVEQRRKE
ALSQMVEEGSPALENTLYDVISRYSFMDLWPCSSKDLDHLSRQEWLMKNINKRVDKSSLL
NCVNITGGDKVSAGLTTNSKSLPPSSKVVYPDTSRMVIYDPRQTLGSEVPASSNSTHTSG
LPPAGNSTTAVSDILKLISPVLATFITNLPVVEGPLPDIDVVLSILLQSPTPTTRIGKPA
VSLQQMQAGPGPSTSDLSGSTKTRMNNGPSHKLPRDEQSGKRKYLDRQEDDESTTEQSRP
LPKDVFRLRQMHRSRGLSTSQTGSAASGGSAFSGEPSVSISND
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaggaacccaagaaaggtgatgatggcacaactaccgacatatacaacgttgaa
gctgccgagatccttgcgaacgaggctcagcttctctctatcgctgaggcaactccaatc
tacgagcaacttctttctacgtttcctacagctgccaaatactggaagcaatatgtggag
gcatacataaccactcacaacgatgaggttacaaaacagatattcagtcggtgtttgttg
aactgccttcaaatttcactatggcgctgctacatcaattttatcaggaaagtaaatgaa
aagaagggaactgagggtcttgaggagaccaggaaagcatttgatttcatgctgaattat
gttggatatgatatctcttctggacctgtatggctggaatacattgctttcttgaagtca
ttaccagttacaacagctcaggaagaatctcaccgcatggcaaatttaaggaaagtatat
caaagagcaattgtaactccaactcatcatgttgaacagctttggaaagactatgaaaat
tttgagaactctgttaatcgcacagctgcaaaagggcttgtatctgaatatcaaccaaag
ttcaatagtgcccgagccgtctacaaagaacgaaagaaatacctagatgaaattgactgg
aatatgcttgccattcctccaaatggatcatacaaggaagagcaacaatgcatggcttgg
aaaaggcttctagtctttgagagagggaatccccaaagagttgacagtgcatctgctaac
agacgcattacattctgttttgagcagtgcctcatgtatttgtatcattatcctgatata
tggtatgattatgccacatggcatgccagtagtggttctgtggattcagcagctaaagta
tttcagcgggctttgaaggctcttcctgattctgagttactgaaatatgcatatgcggaa
ctagaagagtctcgaggtgcaattcagtctgctaagaaaatatatgaaagttttcttgtc
agcaattctggtgcaacatctctagctcagattcagtatattagatttctaaggagaagt
gaaggcatagaagcagctcggaaatactttttggatgctagaaaatcaccaagctgcaca
tatcatgtttttgttgcatatgccacagtagtcttttgtgttgacaaggactcaaaggtc
gcccacaatatatttgaagctggactaaagagattcatgaatgagcccggttacattctt
gaatatgcagattttttgtgtcgcttaaatgatgatagaaatgttcgggctttgtttgag
cgtgctttgagttcacttccccctgaaaaatctgtggaggtctggaaaggattttccaag
tttgagcagacatatggagatttggtgagcatgttgaaggttgaacaaagaaggaaggaa
gccttatcacaaatggttgaagaaggttcgccagcactggagaacactctgtatgatgtc
atttcacgttacagttttatggatctatggccctgctcatcaaaagatcttgatcatcta
tcaagacaagagtggctcatgaaaaacatcaacaagagagttgacaagtcaagtttactt
aattgtgttaatatcactggtggagacaaggtttctgctggactgacaacaaattcgaag
tcgctgccaccgtcttcaaaggttgtttatccagatacctctcgaatggttatatatgat
ccaagacaaactctaggatctgaggttcctgcatcttccaattcaacacatacctctggt
ttacctcctgctggtaatagtacaactgcagtcagtgacattcttaaactaatctcacca
gtgctggccacttttatcacaaatttgcctgttgttgaaggcccacttccagatatagac
gttgttttatctattttactacaaagtcctacaccaacaacacggattggaaaaccagca
gtttctcttcagcaaatgcaggcaggtccaggtcctagcacaagtgatctttcaggctcc
accaagacacggatgaacaatgggccatcccacaagcttcccagagatgaacagtcaggc
aaacgaaaatatcttgataggcaagaagatgatgagagcacaactgaacagagccgtcca
cttccaaaggatgtgtttagactgcggcaaatgcatcgaagtcgaggtctgagcacttcg
cagacaggatcggcagcttctggtggtagcgcgttctccggcgagccatctgttagcatt
agtaatgattga
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