Zingiber officinale (ginger): 121974468
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Entry
121974468 CDS
T08725
Name
(RefSeq) E3 ubiquitin-protein ligase SHPRH-like
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
121974468
Enzymes [BR:
zof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121974468
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121974468
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-1st
Helicase_C
SHPRH_helical-2nd
zf-C3HC4
PHD_5
zf-RING_UBOX
PHD
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
121974468
NCBI-ProteinID:
XP_042381479
LinkDB
All DBs
Position
4B:3829440..3854283
Genome browser
AA seq
1687 aa
AA seq
DB search
MGRKKSHPIRSGGKLSEVCSPSCNEAHNSNNVKTSKQVGVEDDKEHSEFSQPIYIDIDCN
NQGSTEHVDIAEVILNSVNKAGEIIDYGLIKARLNKLKFSLRFHLCNVKRSSFRLGQWPV
LSAVNSIFLESLFLEDHCTEDGRNRSILLSGTFDGSDEGVSGLVHLVSLGFLSLRLIHVV
EDFEKAPSLIFRIEVLKNAFDASDSLLETVRQPWRKSMMNAMAWLRPEFTTLEAIYGIKD
PSFPVDQAVTNNQSKYTQFDVAEFFEAIKRSREEPMLDEELPDLLPRLRPYQRRAAYWMV
QREKEATTLGEKVAVQLSAPYSVPISFVDQSPKMFYNPFNGSISMRPSSSTYVSGGILAD
EMGLGKTVELLACILAHRRPSMEAGYAYQNYSRSNKMEPKIKRQKRERVECICGAASESS
KYTGLWVQCDFCDAWQHAKCVGYFPKKNCLTSHENDSKDGVVNGLSKSKRSRKYKDTSIK
TETDEDYICSLCSELIQAAKIDTCSSATLIVCPAPILAQWESEILRHTRSGSLKICNYEG
ARNLDSSITSRTDMMELANADIVLTTYDVLKEDLSHDSDRHDGDRHFLRFKKRYPVVPTP
LTRITWWRLCLDEAQMVECHQTSVTEMAMRLHAQHHWCITGTPIQRRLDDMYGLLRFLRA
TPFDVYRWWTEIVRDPYEKREAVAMQFVHNFFKQIMWRSSKLHVAEELELPPQEECLSWL
TFSSIEEHFYKKQHETCVTHAHEIIKNLKGDLCKRTSMPGIDASRCDFLSHNEVAKLVGP
LLKLRQACCHPQVGSSGLCSLQQNPLTMEEILDVLIGKAKIEGEEALRKVVSALNGLAGL
AVIEEDVKRAVSLYKEALALADENSLDFRLDPLLNLHIHHNLAEIIPLTSEFSEHCLSAG
SNPADNNEVKKRKAPYMDKFGKYYVKRGKTNMDCKPVFTRQDSSLEQHNTHDDGTFSHFS
SDSKKTSPESDAPCHVSSGCYAIPCLRKTCETIKQKYLSAFVMKLSLAQEEFKTSSMQVS
KNLNELENQSSWWLHALNLINQNKESSEDLKRKIEQALSRNAQSAGLSRVSSRFRSSSGL
MYNIQTSLDSLGSSRQELICRLKEIDKTMTNPKDDDIERLRYCPNCYDVGDGILCLHCEL
DNLFQVYEARLALVRKASNCAMFESVEEALDMQRRNLELNLFFRNKKTSTEVDNGNGKTK
QRLVKESIQVLKVPSELETTLRVIKSHSKSILGKQGLESAKKHLHLFEVMRKEYTHARSL
SRAQAQVLRAHDEIKMATTRLSLKETEDEPAAINVLSKGEVIPSSLQLTSEKFISLSSLQ
RLKGQLRYLKGMAFASQKSPHHSDSLSMPHDTASDEIKGRVTQTDHEPCPICHEKIMDQK
MVFECGHVICCKCCLEMTEYAVVHSGRNQRKWITCPTCRQRTDFENIAFVDEKQNGSDFR
PNSSEPKVVSESSITVQGSYGTKIEAVVRRILWATLNDQEAKILVFSSWNDVLDVLGHAL
AANNITFVRMKGGRKSQVAISQFKGQENSRGEKAKGQLIAKPIQVLMMLVQHGANGLNLL
EAQHVILIEPLLNPAAEAQAISRIHRVGQDKKTFIHRFIVKNSIEESIYKLNMSRAVSSV
ISAKVSKNQDQPLWTLKDVESLFPLASSSETHEDGNDRAASFRNLPPAVAAGLAAERRLM
EAQNNSQ
NT seq
5064 nt
NT seq
+upstream
nt +downstream
nt
atgggtagaaagaaatcccacccaattaggtctggagggaaactatctgaagtctgttcc
cctagctgtaatgaagcacacaattcgaataatgttaagacaagcaaacaagtaggtgta
gaagatgacaaggaacattccgaatttagccaacctatttatattgatatagattgcaat
aatcagggttccacagaacatgttgatatagctgaagtgattctaaattctgttaacaag
gctggtgaaataattgattatggattgatcaaagctaggttgaataagttaaagttttct
ctacgatttcatctatgcaatgtgaagaggagtagctttcgattaggccagtggcctgta
ttatcagcagtcaatagtatctttttagagtctctctttttagaagatcactgtacagag
gatggaagaaaccggtccatcttattatccggtacttttgatgggtctgatgagggtgtc
tcaggtcttgtccacttagtgagcctggggttcctgagtttaaggctcattcatgttgtt
gaagattttgagaaagctccttccttaatttttaggatagaagttctgaaaaatgctttt
gatgcatccgattccctcttagaaacagtgaggcagccatggagaaagagtatgatgaat
gctatggcctggttacgccctgagtttacaactttagaagctatatatggaataaaagac
ccttctttcccagtggatcaagctgttaccaacaaccaaagcaagtatacacagtttgat
gttgctgaattttttgaagccattaagaggtcaagggaggaacctatgttggatgaagaa
cttcctgacttgcttcctcgtttaaggccttaccagcgtcgtgcagcatattggatggtc
cagagagagaaggaagccacaactttaggcgagaaagtagctgttcagctatctgctcca
tattctgtgccaattagttttgttgatcaaagtcctaaaatgttctacaatccattcaac
ggaagtatttctatgcgtccaagctcatcaacgtatgtttctggtgggatcttagctgat
gagatgggtttgggaaagactgttgagttgttggcttgcatcttggcccatcgtagacca
tccatggaagcaggttatgcctaccaaaattactctcgttctaacaaaatggaacccaag
ataaaaagacaaaaaagagaacgtgttgagtgtatttgtggagctgccagtgaaagctca
aaatatacaggattatgggtgcaatgtgatttctgtgatgcttggcaacacgccaagtgt
gttggatacttccctaagaagaactgtttgacttcacatgaaaatgactccaaagatggt
gttgtaaacggtttgtccaaatcaaagcgtagtaggaagtacaaagatactagcatcaaa
acagaaactgatgaagattacatatgctctctgtgttcagagcttattcaagcagccaaa
attgacacatgcagtagtgcaactcttatagtatgcccagcacctatattggctcagtgg
gaatcagagatactgcgtcatacaaggtctggatctcttaaaatctgcaattatgaaggt
gcaaggaacttagattcttcgattacttcaagaacagatatgatggaactggctaatgca
gacattgttctgacaacctatgatgtattaaaagaagacttgtcacatgattctgatagg
catgatggtgatcgtcactttttaagattcaaaaagaggtatcctgttgtccctactcca
cttacaaggattacttggtggaggctgtgcttggatgaagcacagatggtggagtgccac
caaacttctgtgacagagatggcaatgcgtctgcatgcacaacatcactggtgtatcaca
ggaacacctattcaacggaggcttgatgacatgtatgggcttctacgtttccttagagca
actccttttgatgtctatcggtggtggactgaaattgttagagatccttatgagaaaaga
gaagcagtagctatgcaatttgtacacaacttctttaagcaaataatgtggcggtcatct
aaactgcatgtggctgaggagctagagttgccgcctcaggaagaatgcttgtcatggctt
actttctcatcaatcgaagaacatttctataagaaacaacatgaaacttgtgtaacccat
gctcatgaaattataaaaaacttgaagggtgatctttgtaaaagaacatctatgcctggc
atcgatgcttcacgctgtgacttcctctcacataatgaagttgcaaagcttgttggccca
ctcttaaagctccgtcaggcttgttgccatccacaagtgggaagctctggtctctgctca
ttgcaacaaaatcctttgaccatggaagaaattttagacgttcttattggaaaagccaaa
atcgaaggagaagaagctttacgaaaagttgttagtgcattaaatggtctagctggatta
gctgtaattgaggaggatgtaaaaagggctgtgtcattgtataaagaagcattggcatta
gctgatgaaaattcgcttgattttcgcttggatccattgttgaaccttcacattcaccac
aacctggctgaaataatccctctcacttctgaattttcagaacattgcttatcagctgga
tcaaaccctgctgataataatgaagtgaagaaaaggaaagcaccttacatggacaagttt
gggaagtactatgtaaagagaggcaaaactaatatggactgcaaaccagttttcactcgg
caggattcatctttggagcaacataatacacacgatgatggcacctttagtcatttctcc
tcagatagtaaaaagacaagtccagaaagtgatgctccttgtcatgtatcatctggatgt
tatgctatcccttgcttgaggaagacgtgtgaaaccattaaacagaaatacctatctgcc
tttgttatgaagttgtccttggcccaggaagaattcaaaacttcatccatgcaggtctct
aagaatttaaatgagctagaaaatcaaagcagttggtggttacatgcgcttaatcttatt
aatcagaacaaggaatcatcagaggaccttaaacggaagattgagcaagctctctctaga
aatgcacaaagtgcaggattatcgagagtttcatcaaggtttagaagctcaagtggatta
atgtacaatatccagactagtcttgattctttgggaagttccaggcaagaattaatttgc
cgactaaaagaaattgataaaacaatgaccaatcccaaggacgacgacattgaacgtctt
agatattgtccaaattgttatgatgttggcgatggcattctatgcctccactgtgaactt
gataatctattccaggtatatgaagctagactcgctcttgtgaggaaagcaagcaattgt
gcgatgtttgaatcagtagaagaagctttggacatgcaaaggcgaaatttggagttaaat
ctttttttccgtaacaagaaaacttcaacagaagttgacaatgggaatggaaagactaag
caacgtcttgttaaagaatctattcaggtattgaaagtcccttctgaactggagactact
cttagagtcataaaaagccactcgaagtcgatcttaggaaagcagggcttggaatctgct
aaaaagcacttgcatctttttgaggttatgcgcaaggaatacactcatgcaagatccttg
tcaagagctcaagctcaggtattgcgtgctcatgatgaaatcaaaatggctaccacgaga
ttgagtctaaaagaaacagaggatgaacctgctgctataaatgtgttaagtaaaggagaa
gtgattccatctagcctgcaattaactagtgagaagtttatttcattgtcatcattacag
cgccttaaaggacaactccgttatctcaaggggatggctttcgctagtcaaaaaagtcct
catcattctgattcactttctatgcctcatgatacagcttctgatgaaattaaaggaaga
gtgactcagacagatcatgagccttgccctatatgtcatgagaaaattatggatcaaaag
atggtttttgaatgtggacatgtcatttgttgcaaatgttgtcttgaaatgactgaatat
gcagtagtgcattctggaagaaatcaacgaaaatggattacatgtcctacttgtcgtcag
cgtacagacttcgagaacattgcatttgtagatgaaaaacagaatggcagtgattttaga
cccaattcttctgaacctaaagttgtttctgaaagcagtatcacagtccaaggatcatat
ggaactaagatcgaagcagttgtaagaagaatattatgggcaactttaaatgatcaagag
gccaaaattcttgtgttttccagctggaatgatgttcttgatgtgttagggcatgcctta
gctgctaataatattacatttgttcggatgaaaggtggcaggaaatcgcaagtagcaatt
tcacaatttaaaggacaagagaattcacgaggtgaaaaggcaaaagggcagctcattgca
aaacctatccaagtcctcatgatgcttgttcaacatggagcgaatggtctgaatctctta
gaagcccagcatgttattctcattgaaccgttgcttaatcctgcagcagaagcacaggca
atcagccgcatccatagagtcgggcaggataagaagacatttattcaccgattcatagtc
aagaactctatagaggagagtatatacaagctgaatatgtctagagcagtcagttctgtc
attagtgccaaagttagcaaaaaccaagatcagccactttggacactaaaagatgtggag
tccttgttcccgttggcaagctcgtctgagacgcatgaagacggaaacgatcgcgctgca
agttttaggaatttaccaccagcagttgcagcaggactggcggcagaaaggagattgatg
gaggctcaaaacaattcgcaataa
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integrated database retrieval system
